PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 384 385 386 387 388 389 390 391 392 ... 1720 1721 » 19351-19400 / 86044 show all
jlack-gatk	INDEL	D1_5	map_l125_m2_e0	*	94.2098	98.7752	90.0478	89.8856	1129	14	1131	125	6	4.8000
ckim-gatk	INDEL	D1_5	map_l125_m2_e0	*	96.1316	98.7752	93.6258	90.6812	1129	14	1131	77	6	7.7922
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	96.5066	94.4770	98.6254	46.6789	1129	66	1148	16	15	93.7500
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	91.4848	85.6601	98.1595	56.6489	1129	189	1120	21	21	100.0000
jpowers-varprowl	INDEL	*	map_l100_m1_e0	homalt	95.3105	91.9315	98.9474	78.3927	1128	99	1128	12	8	66.6667
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	96.7955	94.3933	99.3232	30.5115	1128	67	1174	8	8	100.0000
dgrover-gatk	INDEL	D1_5	map_l125_m2_e0	*	98.6027	98.6877	98.5179	88.1508	1128	15	1130	17	4	23.5294
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	96.7955	94.3933	99.3232	30.5115	1128	67	1174	8	8	100.0000
ckim-dragen	INDEL	D1_5	map_l125_m2_e1	*	97.0711	97.4935	96.6524	88.4160	1128	29	1126	39	5	12.8205
jpowers-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.0769	99.9113	98.2563	59.2395	1127	1	1127	20	10	50.0000
jli-custom	INDEL	D1_5	map_l125_m2_e0	*	98.6439	98.6002	98.6877	86.0337	1127	16	1128	15	5	33.3333
mlin-fermikit	INDEL	I6_15	HG002complexvar	homalt	91.3948	92.8336	90.0000	56.7129	1127	87	1152	128	127	99.2188
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.2514	99.9113	98.6002	57.2710	1127	1	1127	16	10	62.5000
ghariani-varprowl	INDEL	*	map_l100_m1_e0	homalt	94.7855	91.8500	97.9149	78.8807	1127	100	1127	24	8	33.3333
gduggal-snapplat	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.0245	92.0752	98.1691	77.4877	1127	97	1126	21	11	52.3810
mlin-fermikit	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	84.6414	86.8827	82.5129	86.9736	1126	170	1123	238	154	64.7059
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.9113	99.8227	100.0000	54.1531	1126	2	1126	0	0
qzeng-custom	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	83.2079	85.6274	80.9215	46.7151	1126	189	1247	294	107	36.3946
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8670	99.8227	99.9113	46.4608	1126	2	1126	1	1	100.0000
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	0.0000	87.2192	0.0000	0.0000	1126	165	0	0	0
gduggal-bwafb	INDEL	D6_15	HG002complexvar	homalt	93.8652	96.3216	91.5309	60.1040	1126	43	1124	104	101	97.1154
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8670	99.8227	99.9113	54.5565	1126	2	1126	1	1	100.0000
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	96.9869	94.2259	99.9146	34.2135	1126	69	1170	1	1	100.0000
jli-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	96.7064	94.2259	99.3209	30.4194	1126	69	1170	8	7	87.5000
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8225	99.7340	99.9112	51.8392	1125	3	1125	1	0	0.0000
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8225	99.7340	99.9112	52.5895	1125	3	1125	1	0	0.0000
cchapple-custom	INDEL	D1_5	map_l125_m2_e1	*	96.2092	97.2342	95.2055	85.6546	1125	32	1112	56	6	10.7143
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8668	99.7340	100.0000	43.5354	1125	3	1118	0	0
ciseli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	56.2607	88.9328	41.1449	83.1108	1125	140	1150	1645	97	5.8967
mlin-fermikit	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.5545	99.7340	97.4026	53.7630	1125	3	1125	30	23	76.6667
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	96.2904	94.1423	98.5390	34.0824	1125	70	1214	18	14	77.7778
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8668	99.7340	100.0000	42.7189	1125	3	1125	0	0
egarrison-hhga	INDEL	D1_5	map_l125_m2_e0	*	98.4252	98.4252	98.4252	86.5939	1125	18	1125	18	5	27.7778
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8668	99.7340	100.0000	42.5727	1125	3	1125	0	0
rpoplin-dv42	INDEL	D1_5	map_l125_m2_e0	*	98.3836	98.4252	98.3421	86.5303	1125	18	1127	19	8	42.1053
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8668	99.7340	100.0000	52.3709	1125	3	1125	0	0
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.4847	1124	4	1124	1	1	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8224	99.6454	100.0000	42.4180	1124	4	1124	0	0
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.5727	1124	4	1124	1	1	100.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7338	99.6454	99.8224	41.5672	1124	4	1124	2	2	100.0000
hfeng-pmm1	INDEL	D1_5	map_l125_m2_e1	*	98.2094	97.1478	99.2945	84.5735	1124	33	1126	8	1	12.5000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	93.0849	87.0643	100.0000	31.6290	1124	167	1150	0	0
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.6020	1124	4	1124	1	1	100.0000
gduggal-bwavard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	90.6805	83.0746	99.8195	58.2831	1124	229	1106	2	1	50.0000
jmaeng-gatk	INDEL	D1_5	map_l125_m2_e0	*	96.1968	98.3377	94.1472	90.8640	1124	19	1126	70	6	8.5714
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.8530	86.9868	99.5675	29.4261	1123	168	1151	5	5	100.0000
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7779	99.5567	100.0000	51.3978	1123	5	1130	0	0
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7779	99.5567	100.0000	49.8447	1123	5	1130	0	0
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.6893	99.5567	99.8222	56.6808	1123	5	1123	2	0	0.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7779	99.5567	100.0000	51.9264	1123	5	1123	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge