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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 380 381 382 383 384 385 386 387 388 ... 1720 1721 » 19151-19200 / 86044 show all
ckim-gatk	INDEL	D6_15	HG002complexvar	homalt	99.4466	99.9145	98.9831	63.0094	1168	1	1168	12	11	91.6667
gduggal-snapvard	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.6357	95.4248	97.8778	71.6350	1168	56	1153	25	8	32.0000
gduggal-bwavard	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.4522	95.3431	99.6567	58.4374	1167	57	1161	4	3	75.0000
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	82.5318	70.7702	98.9822	46.3359	1167	482	1167	12	11	91.6667
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	93.2109	98.7310	88.2753	60.4783	1167	15	1167	155	153	98.7097
jmaeng-gatk	INDEL	D6_15	HG002complexvar	homalt	99.3614	99.8289	98.8983	63.0673	1167	2	1167	13	12	92.3077
hfeng-pmm2	INDEL	D6_15	HG002complexvar	homalt	99.4885	99.8289	99.1504	61.5359	1167	2	1167	10	9	90.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.3614	98.7310	100.0000	27.9729	1167	15	1169	0	0
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	95.8128	92.2530	99.6584	86.7818	1167	98	1167	4	4	100.0000
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	97.3289	98.9813	95.7307	72.6231	1166	12	1166	52	52	100.0000
hfeng-pmm1	INDEL	D6_15	HG002complexvar	homalt	99.5730	99.7434	99.4032	61.2103	1166	3	1166	7	7	100.0000
hfeng-pmm3	INDEL	D6_15	HG002complexvar	homalt	99.5730	99.7434	99.4032	61.3382	1166	3	1166	7	6	85.7143
jlack-gatk	INDEL	D6_15	HG002complexvar	homalt	99.0234	99.7434	98.3137	61.3807	1166	3	1166	20	19	95.0000
gduggal-snapfb	INDEL	*	map_l100_m1_e0	homalt	96.6439	95.0285	98.3151	86.5465	1166	61	1167	20	12	60.0000
gduggal-snapfb	INDEL	D1_5	map_l100_m1_e0	het	95.6711	96.4433	94.9111	81.1539	1166	43	1175	63	7	11.1111
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	74.9362	87.5375	65.5063	57.1453	1166	166	1656	872	119	13.6468
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	24.2259	13.9254	93.0657	54.5455	1165	7201	1275	95	89	93.6842
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	95.6879	92.0949	99.5726	86.9710	1165	100	1165	5	3	60.0000
asubramanian-gatk	INDEL	I1_5	map_l100_m2_e0	*	91.2346	85.1608	98.2412	87.9589	1165	203	1173	21	4	19.0476
ckim-vqsr	INDEL	D1_5	map_l100_m1_e0	het	96.5230	96.3606	96.6860	89.4465	1165	44	1167	40	4	10.0000
egarrison-hhga	INDEL	D16_PLUS	HG002compoundhet	*	61.7860	49.7651	81.4641	41.2623	1165	1176	1213	276	256	92.7536
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	93.2373	98.5618	88.4586	59.3016	1165	17	1165	152	150	98.6842
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	96.3994	93.2746	99.7407	59.0297	1165	84	1154	3	3	100.0000
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.3994	93.2746	99.7407	59.0297	1165	84	1154	3	3	100.0000
jmaeng-gatk	SNP	tv	map_l125_m0_e0	homalt	68.7924	52.4538	99.9142	80.5764	1165	1056	1165	1	1	100.0000
ciseli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	83.6651	85.4732	81.9319	70.4517	1165	198	1179	260	119	45.7692
ckim-dragen	INDEL	D6_15	HG002complexvar	homalt	98.2293	99.6578	96.8412	63.9172	1165	4	1165	38	37	97.3684
rpoplin-dv42	INDEL	D1_5	map_siren	homalt	99.4879	99.7432	99.2340	80.1520	1165	3	1166	9	7	77.7778
hfeng-pmm2	INDEL	D1_5	map_siren	homalt	99.6580	99.6575	99.6584	78.7708	1164	4	1167	4	4	100.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.7277	98.8115	98.6441	72.5709	1164	14	1164	16	16	100.0000
astatham-gatk	INDEL	D1_5	map_siren	homalt	99.6154	99.6575	99.5734	81.2660	1164	4	1167	5	4	80.0000
bgallagher-sentieon	INDEL	D1_5	map_siren	homalt	99.6580	99.6575	99.6584	81.1615	1164	4	1167	4	4	100.0000
mlin-fermikit	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	90.4777	92.0158	88.9901	86.8129	1164	101	1172	145	90	62.0690
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	96.2459	94.4805	98.0785	59.8187	1164	68	1174	23	10	43.4783
ltrigg-rtg1	INDEL	D1_5	map_siren	homalt	99.7001	99.6575	99.7427	77.3460	1164	4	1163	3	2	66.6667
hfeng-pmm3	INDEL	D1_5	map_siren	homalt	99.6576	99.5719	99.7434	77.6311	1163	5	1166	3	3	100.0000
hfeng-pmm1	INDEL	D1_5	map_siren	homalt	99.7001	99.5719	99.8286	78.3166	1163	5	1165	2	2	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.9371	98.3926	99.4876	28.3354	1163	19	1165	6	6	100.0000
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.1898	98.3926	100.0000	27.0507	1163	19	1165	0	0
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.9371	98.3926	99.4876	27.8052	1163	19	1165	6	6	100.0000
ckim-gatk	SNP	tv	map_l250_m2_e1	het	72.9840	59.1858	95.1718	96.8842	1163	802	1163	59	1	1.6949
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.9371	98.3926	99.4876	28.2475	1163	19	1165	6	6	100.0000
anovak-vg	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.6046	94.9346	96.2841	59.3488	1162	62	1166	45	34	75.5556
egarrison-hhga	INDEL	D1_5	map_siren	homalt	99.4012	99.4863	99.3162	80.2231	1162	6	1162	8	7	87.5000
dgrover-gatk	INDEL	D1_5	map_siren	homalt	99.5720	99.4863	99.6578	81.5178	1162	6	1165	4	4	100.0000
jli-custom	INDEL	D1_5	map_siren	homalt	99.5293	99.4863	99.5723	80.0137	1162	6	1164	5	5	100.0000
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	86.5974	85.2531	87.9848	76.9339	1162	201	1157	158	144	91.1392
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.6837	98.6418	98.7256	72.6343	1162	16	1162	15	15	100.0000
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.1468	98.3080	100.0000	27.7467	1162	20	1164	0	0
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	95.1000	98.3080	92.0949	58.3471	1162	20	1165	100	99	99.0000

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