PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18751-18800 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 90.7286 | 91.6605 | 89.8154 | 74.1565 | 1242 | 113 | 1314 | 149 | 130 | 87.2483 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.3889 | 94.4487 | 96.3481 | 51.8879 | 1242 | 73 | 1240 | 47 | 41 | 87.2340 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.7023 | 95.9815 | 99.4860 | 36.7100 | 1242 | 52 | 1355 | 7 | 7 | 100.0000 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.2823 | 95.8333 | 98.7758 | 84.0415 | 1242 | 54 | 1291 | 16 | 13 | 81.2500 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.6256 | 98.1818 | 99.0734 | 84.3863 | 1242 | 23 | 1283 | 12 | 10 | 83.3333 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 57.1877 | 67.4267 | 49.6483 | 70.3545 | 1242 | 600 | 1200 | 1217 | 171 | 14.0509 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e0 | het | 98.6492 | 98.8057 | 98.4933 | 82.5249 | 1241 | 15 | 1242 | 19 | 5 | 26.3158 | |
| qzeng-custom | SNP | * | map_l250_m0_e0 | * | 69.9445 | 58.1265 | 87.7944 | 98.0283 | 1241 | 894 | 1230 | 171 | 131 | 76.6082 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e0 | homalt | 98.5703 | 98.4140 | 98.7271 | 83.6796 | 1241 | 20 | 1241 | 16 | 9 | 56.2500 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e0 | het | 92.5331 | 98.8057 | 87.0093 | 88.9275 | 1241 | 15 | 1219 | 182 | 48 | 26.3736 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1886 | 98.1028 | 98.2745 | 88.1406 | 1241 | 24 | 1253 | 22 | 8 | 36.3636 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.8598 | 93.2331 | 98.6389 | 71.3663 | 1240 | 90 | 1232 | 17 | 12 | 70.5882 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m2_e0 | het | 96.1316 | 98.7261 | 93.6699 | 89.5668 | 1240 | 16 | 1243 | 84 | 6 | 7.1429 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.0496 | 99.2794 | 93.0233 | 76.1666 | 1240 | 9 | 1240 | 93 | 84 | 90.3226 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.0496 | 99.2794 | 93.0233 | 76.1666 | 1240 | 9 | 1240 | 93 | 84 | 90.3226 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 86.0678 | 81.0458 | 91.7533 | 79.3558 | 1240 | 290 | 1235 | 111 | 68 | 61.2613 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 86.0678 | 81.0458 | 91.7533 | 79.3558 | 1240 | 290 | 1235 | 111 | 68 | 61.2613 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | homalt | 98.5288 | 98.2554 | 98.8038 | 83.0311 | 1239 | 22 | 1239 | 15 | 10 | 66.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e1 | het | 97.7909 | 97.7129 | 97.8690 | 82.3415 | 1239 | 29 | 1240 | 27 | 9 | 33.3333 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e0 | homalt | 98.5676 | 98.2554 | 98.8818 | 84.8792 | 1239 | 22 | 1238 | 14 | 12 | 85.7143 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.2631 | 94.2205 | 98.3962 | 48.3858 | 1239 | 76 | 1227 | 20 | 11 | 55.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e1 | het | 87.6002 | 97.6341 | 79.4365 | 87.6420 | 1238 | 30 | 1607 | 416 | 161 | 38.7019 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.9354 | 94.1445 | 95.7397 | 51.4296 | 1238 | 77 | 1236 | 55 | 43 | 78.1818 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.9246 | 93.0075 | 99.0307 | 72.1673 | 1237 | 93 | 1226 | 12 | 10 | 83.3333 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.7625 | 99.0392 | 98.4873 | 71.5773 | 1237 | 12 | 1237 | 19 | 13 | 68.4211 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.7625 | 99.0392 | 98.4873 | 71.5773 | 1237 | 12 | 1237 | 19 | 13 | 68.4211 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.1847 | 93.8543 | 94.5174 | 64.2660 | 1237 | 81 | 1224 | 71 | 68 | 95.7746 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.1850 | 95.5951 | 98.8287 | 37.6825 | 1237 | 57 | 1350 | 16 | 14 | 87.5000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 56.0471 | 39.0837 | 99.0276 | 46.9019 | 1237 | 1928 | 1222 | 12 | 11 | 91.6667 | |
| gduggal-snapfb | INDEL | * | map_l125_m1_e0 | het | 93.2290 | 92.6592 | 93.8060 | 83.9790 | 1237 | 98 | 1257 | 83 | 14 | 16.8675 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e1 | het | 96.1254 | 97.5552 | 94.7368 | 83.5172 | 1237 | 31 | 1260 | 70 | 7 | 10.0000 | |
| gduggal-snapvard | INDEL | * | map_l150_m1_e0 | * | 84.8673 | 92.3767 | 78.4870 | 90.4884 | 1236 | 102 | 1660 | 455 | 138 | 30.3297 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 64.6148 | 54.0919 | 80.2207 | 60.1084 | 1236 | 1049 | 1890 | 466 | 171 | 36.6953 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.7075 | 95.5178 | 100.0000 | 35.7483 | 1236 | 58 | 1348 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 79.2712 | 87.6596 | 72.3480 | 57.0624 | 1236 | 174 | 1214 | 464 | 433 | 93.3190 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e0 | het | 98.0946 | 98.3280 | 97.8622 | 83.1891 | 1235 | 21 | 1236 | 27 | 7 | 25.9259 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.1570 | 98.8791 | 99.4364 | 71.0422 | 1235 | 14 | 1235 | 7 | 4 | 57.1429 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.1570 | 98.8791 | 99.4364 | 71.0422 | 1235 | 14 | 1235 | 7 | 4 | 57.1429 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.3148 | 95.4405 | 99.2642 | 37.6033 | 1235 | 59 | 1349 | 10 | 10 | 100.0000 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 81.0388 | 91.2786 | 72.8646 | 69.9021 | 1235 | 118 | 1254 | 467 | 416 | 89.0792 | |
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | * | 93.3899 | 92.3019 | 94.5038 | 89.1529 | 1235 | 103 | 1238 | 72 | 21 | 29.1667 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 91.6247 | 97.6285 | 86.3165 | 88.5095 | 1235 | 30 | 1249 | 198 | 31 | 15.6566 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6805 | 98.7990 | 98.5623 | 71.8841 | 1234 | 15 | 1234 | 18 | 12 | 66.6667 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.6805 | 98.7990 | 98.5623 | 71.8841 | 1234 | 15 | 1234 | 18 | 12 | 66.6667 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0369 | 98.7990 | 99.2759 | 70.2133 | 1234 | 15 | 1234 | 9 | 4 | 44.4444 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0369 | 98.7990 | 99.2759 | 70.2133 | 1234 | 15 | 1234 | 9 | 4 | 44.4444 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 75.4653 | 90.5356 | 64.6962 | 41.2162 | 1234 | 129 | 9456 | 5160 | 4823 | 93.4690 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | het | 98.4460 | 98.2484 | 98.6443 | 83.0632 | 1234 | 22 | 1237 | 17 | 4 | 23.5294 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 89.0264 | 97.4704 | 81.9288 | 85.3506 | 1233 | 32 | 943 | 208 | 28 | 13.4615 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e0 | het | 98.2510 | 98.1688 | 98.3333 | 82.0789 | 1233 | 23 | 1475 | 25 | 8 | 32.0000 | |