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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18001-18050 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.9261 | 100.0000 | 99.8524 | 72.4033 | 1353 | 0 | 1353 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e0 | * | 99.2302 | 98.9035 | 99.5591 | 82.7700 | 1353 | 15 | 1355 | 6 | 3 | 50.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8156 | 100.0000 | 99.6318 | 74.2657 | 1353 | 0 | 1353 | 5 | 3 | 60.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4495 | 99.2663 | 99.6334 | 73.6527 | 1353 | 10 | 1359 | 5 | 3 | 60.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e1 | * | 97.3023 | 96.9892 | 97.6173 | 85.4425 | 1353 | 42 | 1352 | 33 | 8 | 24.2424 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8893 | 100.0000 | 99.7788 | 74.2205 | 1353 | 0 | 1353 | 3 | 1 | 33.3333 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8893 | 100.0000 | 99.7788 | 74.1369 | 1353 | 0 | 1353 | 3 | 1 | 33.3333 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7788 | 100.0000 | 99.5585 | 74.0995 | 1353 | 0 | 1353 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m2_e0 | * | 98.9412 | 98.9035 | 98.9788 | 84.3278 | 1353 | 15 | 1357 | 14 | 4 | 28.5714 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 69.7828 | 56.1178 | 92.2449 | 67.9389 | 1353 | 1058 | 1356 | 114 | 34 | 29.8246 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e0 | het | 97.4161 | 97.2682 | 97.5645 | 86.6946 | 1353 | 38 | 1362 | 34 | 9 | 26.4706 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7788 | 100.0000 | 99.5585 | 73.7137 | 1353 | 0 | 1353 | 6 | 5 | 83.3333 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.9865 | 98.4716 | 99.5069 | 53.0976 | 1353 | 21 | 15941 | 79 | 10 | 12.6582 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 76.0030 | 61.7352 | 98.8481 | 36.6332 | 1352 | 838 | 1373 | 16 | 16 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.3986 | 97.4766 | 99.3382 | 61.3636 | 1352 | 35 | 1351 | 9 | 1 | 11.1111 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7413 | 99.9261 | 99.5572 | 74.4050 | 1352 | 1 | 1349 | 6 | 4 | 66.6667 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.4085 | 99.1930 | 99.6249 | 78.2367 | 1352 | 11 | 1328 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m2_e0 | * | 98.9042 | 98.8304 | 98.9781 | 84.3732 | 1352 | 16 | 1356 | 14 | 4 | 28.5714 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7418 | 99.9261 | 99.5582 | 73.6157 | 1352 | 1 | 1352 | 6 | 3 | 50.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 88.1690 | 79.1569 | 99.4968 | 31.0362 | 1352 | 356 | 1384 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 87.8412 | 97.4766 | 79.9394 | 76.0835 | 1352 | 35 | 1319 | 331 | 6 | 1.8127 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.9261 | 99.9261 | 99.9261 | 72.6113 | 1352 | 1 | 1352 | 1 | 0 | 0.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.6411 | 95.0774 | 98.2571 | 84.2376 | 1352 | 70 | 1353 | 24 | 15 | 62.5000 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 98.9764 | 98.8304 | 99.1228 | 85.1466 | 1352 | 16 | 1356 | 12 | 4 | 33.3333 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4849 | 99.1930 | 99.7786 | 75.9411 | 1352 | 11 | 1352 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m2_e0 | * | 97.5824 | 96.0227 | 99.1935 | 85.3475 | 1352 | 56 | 1353 | 11 | 1 | 9.0909 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1930 | 99.1930 | 99.1930 | 76.9218 | 1352 | 11 | 1352 | 11 | 7 | 63.6364 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5215 | 99.1930 | 99.8523 | 76.2248 | 1352 | 11 | 1352 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | map_l250_m0_e0 | * | 98.1132 | 98.6861 | 97.5469 | 93.1376 | 1352 | 18 | 1352 | 34 | 7 | 20.5882 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.3716 | 99.1196 | 99.6249 | 77.6829 | 1351 | 12 | 1328 | 5 | 3 | 60.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.3716 | 99.1196 | 99.6249 | 78.0612 | 1351 | 12 | 1328 | 5 | 3 | 60.0000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.6743 | 90.1869 | 99.6315 | 70.8673 | 1351 | 147 | 1352 | 5 | 3 | 60.0000 | |
| ckim-vqsr | INDEL | * | map_l150_m2_e0 | * | 96.2276 | 95.9517 | 96.5050 | 93.5044 | 1351 | 57 | 1353 | 49 | 6 | 12.2449 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4113 | 99.1196 | 99.7048 | 77.3525 | 1351 | 12 | 1351 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e0 | * | 98.7934 | 98.7573 | 98.8296 | 84.6491 | 1351 | 17 | 1351 | 16 | 3 | 18.7500 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m1_e0 | * | 83.8870 | 73.1061 | 98.3977 | 82.4582 | 1351 | 497 | 1351 | 22 | 10 | 45.4545 | |
| hfeng-pmm2 | SNP | ti | map_l250_m0_e0 | * | 98.1118 | 98.6131 | 97.6156 | 93.5472 | 1351 | 19 | 1351 | 33 | 5 | 15.1515 | |
| hfeng-pmm3 | SNP | ti | map_l250_m0_e0 | * | 98.5053 | 98.6131 | 98.3977 | 92.9205 | 1351 | 19 | 1351 | 22 | 3 | 13.6364 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4113 | 99.1196 | 99.7048 | 77.3525 | 1351 | 12 | 1351 | 4 | 2 | 50.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 98.0091 | 98.7573 | 97.2721 | 88.0110 | 1351 | 17 | 1355 | 38 | 5 | 13.1579 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 94.5086 | 98.3261 | 90.9764 | 72.8370 | 1351 | 23 | 1351 | 134 | 68 | 50.7463 | |
| hfeng-pmm1 | INDEL | * | map_l125_m2_e1 | het | 97.3710 | 95.9517 | 98.8330 | 86.4526 | 1351 | 57 | 1355 | 16 | 1 | 6.2500 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e1 | het | 97.3719 | 95.9517 | 98.8347 | 81.0855 | 1351 | 57 | 1357 | 16 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4479 | 99.1196 | 99.7784 | 77.4446 | 1351 | 12 | 1351 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 88.8814 | 87.5486 | 90.2554 | 74.8436 | 1350 | 192 | 1343 | 145 | 136 | 93.7931 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.9286 | 99.0462 | 98.8113 | 76.1938 | 1350 | 13 | 1330 | 16 | 10 | 62.5000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.1853 | 99.0462 | 99.3248 | 77.9742 | 1350 | 13 | 1324 | 9 | 2 | 22.2222 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.8307 | 99.0462 | 98.6162 | 73.5809 | 1350 | 13 | 1354 | 19 | 4 | 21.0526 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.9373 | 98.2533 | 99.6310 | 67.7611 | 1350 | 24 | 1350 | 5 | 1 | 20.0000 | |
| astatham-gatk | INDEL | * | map_l150_m2_e0 | * | 96.6049 | 95.8807 | 97.3400 | 91.1929 | 1350 | 58 | 1354 | 37 | 7 | 18.9189 | |