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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 346 347 348 349 350 351 352 353 354 ... 1720 1721 » 17451-17500 / 86044 show all
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.0215	98.2585	99.7963	32.1198	1467	26	1470	3	3	100.0000
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	94.6114	90.7236	98.8475	35.5050	1467	150	1458	17	17	100.0000
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.2475	95.8170	98.7214	83.8109	1466	64	1467	19	9	47.3684
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.2475	95.8170	98.7214	83.8109	1466	64	1467	19	9	47.3684
jlack-gatk	SNP	*	map_l250_m0_e0	het	89.1456	97.3440	82.2210	96.2201	1466	40	1466	317	23	7.2555
gduggal-snapfb	SNP	ti	map_l250_m1_e0	homalt	95.2567	91.2259	99.6601	92.2128	1466	141	1466	5	4	80.0000
dgrover-gatk	SNP	*	map_l250_m0_e0	het	97.2149	97.3440	97.0861	94.4551	1466	40	1466	44	7	15.9091
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9318	99.9318	99.9318	43.0237	1465	1	1465	1	1	100.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9659	99.9318	100.0000	45.7608	1465	1	1465	0	0
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.5586	96.7635	98.3668	86.6207	1465	49	1566	26	21	80.7692
mlin-fermikit	SNP	ti	map_l150_m0_e0	het	44.5289	28.7424	98.7862	66.7936	1465	3632	1465	18	3	16.6667
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9659	99.9318	100.0000	43.5670	1465	1	1465	0	0
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9659	99.9318	100.0000	43.8267	1465	1	1465	0	0
jpowers-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.7538	99.9318	97.6032	55.4303	1465	1	1466	36	19	52.7778
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.9871	99.9318	98.0602	53.4268	1465	1	1466	29	19	65.5172
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9659	99.9318	100.0000	42.9072	1465	1	1465	0	0
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.0534	98.1246	100.0000	31.5937	1465	28	1468	0	0
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9659	99.9318	100.0000	43.3050	1465	1	1465	0	0
rpoplin-dv42	SNP	*	map_l250_m0_e0	het	97.3404	97.2112	97.4700	92.1200	1464	42	1464	38	23	60.5263
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7261	99.8636	99.5890	49.1643	1464	2	1454	6	3	50.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.0193	98.0576	100.0000	32.2402	1464	29	1467	0	0
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9317	99.8636	100.0000	45.3935	1464	2	1464	0	0
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9317	99.8636	100.0000	43.1014	1464	2	1464	0	0
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9317	99.8636	100.0000	40.1819	1464	2	1447	0	0
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	96.8901	95.6863	98.1246	84.9192	1464	66	1465	28	18	64.2857
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	96.8901	95.6863	98.1246	84.9192	1464	66	1465	28	18	64.2857
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9317	99.8636	100.0000	43.0793	1464	2	1464	0	0
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.8858	98.0576	99.7281	33.7984	1464	29	1467	4	3	75.0000
gduggal-snapplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	53.2289	38.9258	84.1491	87.7362	1464	2297	1513	285	71	24.9123
gduggal-snapplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	53.2289	38.9258	84.1491	87.7362	1464	2297	1513	285	71	24.9123
ghariani-varprowl	SNP	*	map_l250_m0_e0	het	91.3804	97.1448	86.2618	95.0573	1463	43	1463	233	27	11.5880
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8976	99.7954	100.0000	42.9630	1463	3	1463	0	0
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8976	99.7954	100.0000	44.6809	1463	3	1482	0	0
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8976	99.7954	100.0000	42.8240	1463	3	1478	0	0
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8634	99.7271	100.0000	43.1128	1462	4	1462	0	0
mlin-fermikit	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.5516	99.7271	97.4035	50.4781	1462	4	1463	39	31	79.4872
gduggal-bwaplat	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	78.4779	66.1838	96.3816	73.7433	1462	747	1465	55	51	92.7273
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	*	69.8019	55.0659	95.3064	79.2366	1462	1193	1462	72	30	41.6667
raldana-dualsentieon	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	98.0221	96.4380	99.6592	65.6762	1462	54	1462	5	2	40.0000
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8634	99.7271	100.0000	46.4273	1462	4	1462	0	0
hfeng-pmm1	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	98.0879	96.4380	99.7952	66.9971	1462	54	1462	3	1	33.3333
astatham-gatk	SNP	tv	map_l250_m1_e0	het	89.4463	81.8131	98.6505	91.5618	1462	325	1462	20	3	15.0000
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7270	99.6589	99.7951	46.6278	1461	5	1461	3	3	100.0000
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	94.5501	90.3525	99.1566	32.4379	1461	156	1646	14	14	100.0000
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	53.2962	53.7725	52.8282	94.9386	1461	1256	1485	1326	114	8.5973
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	45.3666	30.7174	86.7262	43.9252	1460	3293	1457	223	197	88.3408
raldana-dualsentieon	SNP	*	map_l250_m0_e0	het	96.7528	96.9456	96.5608	92.4896	1460	46	1460	52	1	1.9231
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	95.5044	99.5907	91.7402	55.4244	1460	6	1455	131	24	18.3206
ckim-isaac	INDEL	D1_5	HG002compoundhet	het	68.7756	84.4907	57.9897	63.2088	1460	268	1125	815	730	89.5706
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7268	99.5907	99.8632	46.2500	1460	6	1460	2	1	50.0000

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