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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 337 338 339 340 341 342 343 344 345 ... 1720 1721 » 17001-17050 / 86044 show all
gduggal-bwaplat	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.0673	90.9611	99.5617	70.9107	1590	158	1590	7	6	85.7143
gduggal-bwaplat	SNP	tv	map_l150_m0_e0	*	55.0840	38.0930	99.4371	95.3509	1590	2584	1590	9	4	44.4444
jli-custom	SNP	ti	map_l250_m1_e0	homalt	99.3746	98.8799	99.8743	84.2895	1589	18	1589	2	2	100.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.1692	87.2119	100.0000	32.0201	1589	233	1622	0	0
bgallagher-sentieon	SNP	ti	map_l250_m1_e0	homalt	99.3125	98.8799	99.7489	85.0633	1589	18	1589	4	3	75.0000
gduggal-snapplat	SNP	tv	map_l250_m2_e0	het	85.9616	81.9072	90.4382	95.1114	1589	351	1589	168	70	41.6667
jmaeng-gatk	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.9241	87.1570	99.5086	30.3082	1588	234	1620	8	8	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.6451	98.4501	98.8410	73.7492	1588	25	1535	18	13	72.2222
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.8998	98.4501	99.3536	73.4648	1588	25	1537	10	8	80.0000
ckim-dragen	SNP	ti	map_l250_m1_e0	homalt	99.1261	98.8177	99.4364	82.0944	1588	19	1588	9	8	88.8889
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.1378	87.1570	100.0000	32.6259	1588	234	1619	0	0
jpowers-varprowl	INDEL	I1_5	map_siren	het	93.3720	94.3486	92.4154	83.6731	1586	95	1584	130	105	80.7692
jmaeng-gatk	SNP	tv	map_l250_m2_e1	*	69.5004	54.3896	96.2379	96.4989	1586	1330	1586	62	2	3.2258
ndellapenna-hhga	SNP	ti	map_l250_m1_e0	homalt	99.2491	98.6932	99.8112	85.5873	1586	21	1586	3	3	100.0000
gduggal-snapvard	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	74.2485	93.1298	61.7328	60.2144	1586	117	3299	2045	1364	66.6993
gduggal-snapplat	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	94.2325	90.6751	98.0805	79.1908	1585	163	1584	31	13	41.9355
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	61.4567	89.8526	46.6986	86.2385	1585	179	1655	1889	13	0.6882
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	72.9624	58.1711	97.8403	43.0063	1584	1139	1495	33	31	93.9394
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.9828	98.1401	97.8261	72.8896	1583	30	1530	34	24	70.5882
gduggal-bwaplat	SNP	tv	map_l150_m1_e0	homalt	57.2617	40.1166	100.0000	85.3494	1583	2363	1583	0	0
eyeh-varpipe	INDEL	D1_5	HG002compoundhet	het	84.7249	91.5509	78.8462	70.2988	1582	146	533	143	97	67.8322
gduggal-bwafb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	82.7375	72.6354	96.1036	54.2365	1582	596	3675	149	111	74.4966
jlack-gatk	INDEL	D16_PLUS	HG002complexvar	*	96.5938	96.2264	96.9641	66.5839	1581	62	1565	49	36	73.4694
gduggal-snapplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	37.1926	25.0079	72.5332	64.8432	1581	4741	1529	579	94	16.2349
gduggal-snapplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	37.1926	25.0079	72.5332	64.8432	1581	4741	1529	579	94	16.2349
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.0605	98.2598	99.8745	43.2288	1581	28	1591	2	2	100.0000
cchapple-custom	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	0.0000	86.7728	0.0000	0.0000	1581	241	0	0	0
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.9052	100.0000	99.8105	51.3073	1580	0	1580	3	0	0.0000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8420	100.0000	99.6845	55.0099	1580	0	1580	5	0	0.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8105	100.0000	99.6217	53.8819	1580	0	1580	6	0	0.0000
dgrover-gatk	SNP	ti	map_l250_m1_e0	homalt	99.0596	98.3199	99.8105	85.5645	1580	27	1580	3	2	66.6667
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8736	100.0000	99.7475	55.0256	1580	0	1580	4	0	0.0000
ckim-isaac	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	94.3567	89.4171	99.8741	46.5320	1580	187	1586	2	1	50.0000
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.9684	100.0000	99.9367	49.1803	1580	0	1580	1	0	0.0000
ltrigg-rtg1	INDEL	I16_PLUS	*	hetalt	85.7294	75.3098	99.4953	51.3953	1580	518	1577	8	8	100.0000
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5326	100.0000	99.0695	50.6581	1580	0	1597	15	0	0.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8420	100.0000	99.6845	52.3308	1580	0	1580	5	0	0.0000
anovak-vg	INDEL	D1_5	map_l100_m1_e0	*	84.4511	85.4978	83.4298	83.8652	1580	268	1586	315	119	37.7778
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5589	100.0000	99.1217	56.3407	1580	0	1580	14	0	0.0000
gduggal-bwafb	INDEL	D1_5	HG002compoundhet	het	94.6747	91.3773	98.2190	47.8412	1579	149	7831	142	74	52.1127
qzeng-custom	SNP	ti	map_l150_m0_e0	homalt	72.5105	57.1894	99.0446	79.2025	1579	1182	1555	15	15	100.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.4573	97.8921	99.0291	73.9064	1579	34	1530	15	10	66.6667
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8418	99.8734	99.8102	55.3516	1578	2	1578	3	0	0.0000
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.8004	97.8301	97.7707	70.7090	1578	35	1535	35	26	74.2857
ltrigg-rtg1	INDEL	I16_PLUS	HG002compoundhet	hetalt	85.8044	75.3942	99.5501	38.3274	1578	515	1549	7	7	100.0000
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7466	99.8734	99.6200	55.6834	1578	2	1573	6	1	16.6667
rpoplin-dv42	SNP	ti	map_l250_m1_e0	homalt	98.8722	98.1954	99.5584	86.5187	1578	29	1578	7	7	100.0000
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	78.0896	75.1071	81.3187	71.3321	1578	523	1554	357	352	98.5994
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4692	99.8734	99.0683	51.6226	1578	2	1595	15	0	0.0000
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7788	99.8734	99.6843	54.0070	1578	2	1579	5	0	0.0000

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