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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
16651-16700 / 86044 show all
ckim-vqsrINDELD16_PLUS*homalt
99.0314
99.7045
98.3673
70.9863
1687516872822
78.5714
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.2934
99.0605
99.5275
75.3924
168716168583
37.5000
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
62.3368
46.0175
96.5915
42.2906
1687197917576255
88.7097
astatham-gatkINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.6399
91.5309
97.9675
67.1249
168615616873530
85.7143
bgallagher-sentieonINDELD16_PLUS*homalt
98.7698
99.6454
97.9094
70.3716
1686616863627
75.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.9407
99.8815
100.0000
64.4454
16862168600
hfeng-pmm1SNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.9407
99.8815
100.0000
65.2514
16862168600
hfeng-pmm2SNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.9407
99.8815
100.0000
65.8566
16862168600
raldana-dualsentieonINDELD16_PLUS*homalt
99.2348
99.6454
98.8277
68.4541
1686616862016
80.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.9111
99.8815
99.9407
63.6892
16862168611
100.0000
eyeh-varpipeINDEL*HG002complexvarhetalt
61.1209
45.5799
92.7426
76.1697
168620133642285277
97.1930
dgrover-gatkINDELD16_PLUS*homalt
98.8856
99.6454
98.1374
70.5317
1686616863223
71.8750
jmaeng-gatkINDELD16_PLUS*homalt
99.0018
99.6454
98.3664
70.1757
1686616862820
71.4286
jli-customSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.8814
99.8223
99.9407
64.3853
16853168510
0.0000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.9111
99.8223
100.0000
64.1566
16853168500
gduggal-bwaplatSNPtvfunc_cdshomalt
99.4394
98.8850
100.0000
27.0563
168519168500
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
83.1128
95.5215
73.5573
89.2251
168579170861476
12.3779
rpoplin-dv42INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
98.4511
98.9430
97.9639
73.8833
16851816843528
80.0000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.2044
98.8843
99.5266
75.4930
168419168281
12.5000
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.3152
95.0875
99.6497
51.5280
168487170765
83.3333
jlack-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
98.9127
98.8843
98.9412
74.7999
1684191682184
22.2222
ckim-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.8814
99.7630
100.0000
64.0862
16844168400
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.8222
99.7630
99.8814
64.1429
16844168422
100.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.8814
99.7630
100.0000
64.2235
16844168400
mlin-fermikitSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
94.2645
99.7630
89.3404
69.5631
168441693202155
76.7327
ckim-dragenINDELD16_PLUS*homalt
97.0588
99.4681
94.7635
72.2066
1683916839384
90.3226
anovak-vgSNPtvfunc_cdshomalt
98.9685
98.7676
99.1701
25.0222
16832116731411
78.5714
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
78.6349
78.0148
79.2648
83.6794
16824741682440405
92.0455
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.7923
99.6445
99.9406
65.1625
16826168211
100.0000
cchapple-customINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
94.9746
0.0000
0.0000
168289000
gduggal-bwavardSNPtvfunc_cdshomalt
99.3503
98.7089
100.0000
25.9620
168222167400
ckim-vqsrSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.8220
99.6445
100.0000
64.1135
16826168200
gduggal-snapvardSNPtvfunc_cdshomalt
99.2613
98.5915
99.9402
26.1484
168024167111
100.0000
ghariani-varprowlSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
93.8322
99.5261
88.7546
70.2144
168081689214129
60.2804
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_diTR_51to200*
87.9863
79.9619
97.8009
49.2660
168042116903836
94.7368
jpowers-varprowlSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
92.9799
99.5261
87.2417
71.6212
168081689247126
51.0121
jli-customINDELD16_PLUS*homalt
99.0858
99.2908
98.8817
67.1754
16801216801913
68.4211
hfeng-pmm2INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.1148
98.6494
99.5846
73.9124
168023167872
28.5714
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.1148
98.6494
99.5846
74.0889
168023167871
14.2857
jlack-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.7031
99.4668
99.9405
63.6364
16799167911
100.0000
hfeng-pmm3INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.1143
98.5907
99.6435
73.6743
167924167760
0.0000
dgrover-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.2777
94.8052
99.8826
40.8681
167992170122
100.0000
astatham-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.7327
99.4668
100.0000
64.1699
16799167900
ltrigg-rtg2INDELD1_5HG002compoundhethet
97.0089
97.1644
96.8539
67.7653
16794917245627
48.2143
ckim-dragenSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.6736
99.4668
99.8812
64.0938
16799168222
100.0000
jli-customINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.1922
94.7487
99.7651
35.9534
167893169944
100.0000
hfeng-pmm3INDELD16_PLUS*homalt
99.3781
99.1726
99.5846
66.6072
167814167874
57.1429
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
60.3322
92.2485
44.8239
74.0840
1678141169320842043
98.0326
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
60.3322
92.2485
44.8239
74.0840
1678141169320842043
98.0326
hfeng-pmm2INDELD16_PLUS*homalt
99.0257
99.1135
98.9381
67.4789
16771516771812
66.6667