PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16601-16650 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | het | 97.1755 | 95.2994 | 99.1269 | 86.3845 | 1703 | 84 | 1703 | 15 | 8 | 53.3333 | |
| rpoplin-dv42 | SNP | tv | func_cds | homalt | 99.9706 | 99.9413 | 100.0000 | 27.8695 | 1703 | 1 | 1703 | 0 | 0 | ||
| ciseli-custom | SNP | tv | func_cds | homalt | 99.1797 | 99.8826 | 98.4866 | 26.8313 | 1702 | 2 | 1692 | 26 | 9 | 34.6154 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.3865 | 92.3996 | 98.5731 | 65.0648 | 1702 | 140 | 1727 | 25 | 7 | 28.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | HG002compoundhet | het | 95.8083 | 98.4954 | 93.2640 | 79.3041 | 1702 | 26 | 1703 | 123 | 122 | 99.1870 | |
| ckim-gatk | INDEL | D1_5 | HG002compoundhet | het | 96.2104 | 98.4375 | 94.0819 | 78.9081 | 1701 | 27 | 1701 | 107 | 105 | 98.1308 | |
| gduggal-bwavard | SNP | ti | map_l250_m2_e0 | homalt | 98.3503 | 97.2556 | 99.4700 | 88.0085 | 1701 | 48 | 1689 | 9 | 6 | 66.6667 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 44.4518 | 41.8244 | 47.4313 | 70.0067 | 1701 | 2366 | 1708 | 1893 | 1866 | 98.5737 | |
| dgrover-gatk | INDEL | D1_5 | HG002compoundhet | het | 96.0763 | 98.4375 | 93.8258 | 79.0071 | 1701 | 27 | 1702 | 112 | 111 | 99.1071 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e0 | het | 79.5566 | 73.6888 | 86.4399 | 92.5370 | 1700 | 607 | 1855 | 291 | 32 | 10.9966 | |
| ckim-dragen | INDEL | D1_5 | HG002compoundhet | het | 98.0379 | 98.3796 | 97.6985 | 74.2557 | 1700 | 28 | 1698 | 40 | 38 | 95.0000 | |
| mlin-fermikit | SNP | tv | func_cds | homalt | 99.4152 | 99.7653 | 99.0676 | 23.6994 | 1700 | 4 | 1700 | 16 | 14 | 87.5000 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e0 | * | 48.4805 | 33.9257 | 84.9075 | 79.7858 | 1699 | 3309 | 1699 | 302 | 258 | 85.4305 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.9984 | 94.8103 | 99.2899 | 54.8611 | 1699 | 93 | 1678 | 12 | 9 | 75.0000 | |
| qzeng-custom | SNP | tv | func_cds | homalt | 99.8531 | 99.7066 | 100.0000 | 25.3758 | 1699 | 5 | 1688 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | HG002compoundhet | het | 96.1223 | 98.2639 | 94.0720 | 78.9357 | 1698 | 30 | 1698 | 107 | 105 | 98.1308 | |
| astatham-gatk | INDEL | D1_5 | HG002compoundhet | het | 96.0425 | 98.2639 | 93.9193 | 78.7076 | 1698 | 30 | 1699 | 110 | 109 | 99.0909 | |
| ckim-gatk | SNP | tv | func_cds | homalt | 99.8236 | 99.6479 | 100.0000 | 25.7867 | 1698 | 6 | 1698 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | func_cds | homalt | 99.8236 | 99.6479 | 100.0000 | 26.0775 | 1698 | 6 | 1698 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 51.0900 | 47.6832 | 55.0210 | 72.0588 | 1698 | 1863 | 1704 | 1393 | 1371 | 98.4207 | |
| gduggal-bwaplat | SNP | ti | map_l250_m1_e0 | * | 54.0102 | 37.0605 | 99.5311 | 97.1343 | 1697 | 2882 | 1698 | 8 | 2 | 25.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 76.1074 | 78.6642 | 73.7116 | 78.2560 | 1696 | 460 | 1702 | 607 | 378 | 62.2735 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e1 | het | 83.4646 | 72.3858 | 98.5474 | 93.4041 | 1696 | 647 | 1696 | 25 | 8 | 32.0000 | |
| jli-custom | INDEL | D1_5 | HG002compoundhet | het | 97.4993 | 98.1481 | 96.8589 | 75.3067 | 1696 | 32 | 1696 | 55 | 50 | 90.9091 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.8328 | 92.0195 | 97.8236 | 63.3039 | 1695 | 147 | 1708 | 38 | 31 | 81.5789 | |
| ckim-vqsr | SNP | tv | func_cds | homalt | 99.7352 | 99.4718 | 100.0000 | 25.8206 | 1695 | 9 | 1695 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l250_m2_e1 | het | 71.4817 | 86.2595 | 61.0268 | 91.9453 | 1695 | 270 | 1688 | 1078 | 256 | 23.7477 | |
| asubramanian-gatk | SNP | tv | func_cds | homalt | 99.7352 | 99.4718 | 100.0000 | 25.3304 | 1695 | 9 | 1695 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.6650 | 96.0317 | 99.3548 | 89.1657 | 1694 | 70 | 1694 | 11 | 10 | 90.9091 | |
| jpowers-varprowl | SNP | ti | map_l250_m2_e0 | homalt | 98.3169 | 96.8553 | 99.8232 | 89.5678 | 1694 | 55 | 1694 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | SNP | ti | map_l250_m2_e0 | homalt | 98.3169 | 96.8553 | 99.8232 | 88.3416 | 1694 | 55 | 1694 | 3 | 3 | 100.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.8865 | 96.0317 | 89.9408 | 90.7338 | 1694 | 70 | 1824 | 204 | 45 | 22.0588 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.0578 | 96.0317 | 98.1061 | 87.2243 | 1694 | 70 | 1813 | 35 | 22 | 62.8571 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2083 | 99.4128 | 99.0047 | 74.3003 | 1693 | 10 | 1691 | 17 | 5 | 29.4118 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4408 | 99.3541 | 99.5277 | 74.9889 | 1692 | 11 | 1686 | 8 | 2 | 25.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2662 | 99.3541 | 99.1784 | 74.9780 | 1692 | 11 | 1690 | 14 | 3 | 21.4286 | |
| jmaeng-gatk | INDEL | D1_5 | HG002compoundhet | het | 95.7531 | 97.8588 | 93.7361 | 78.9768 | 1691 | 37 | 1691 | 113 | 110 | 97.3451 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1201 | 99.2954 | 98.9455 | 75.2393 | 1691 | 12 | 1689 | 18 | 3 | 16.6667 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 47.6114 | 41.5540 | 55.7361 | 61.7356 | 1690 | 2377 | 1681 | 1335 | 1256 | 94.0824 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.7315 | 91.7481 | 97.9155 | 67.3720 | 1690 | 152 | 1691 | 36 | 30 | 83.3333 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3238 | 99.2366 | 99.4111 | 74.7171 | 1690 | 13 | 1688 | 10 | 4 | 40.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.7441 | 95.6423 | 99.9404 | 50.0892 | 1690 | 77 | 1677 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 47.7873 | 41.5540 | 56.2207 | 53.8295 | 1690 | 2377 | 1681 | 1309 | 1280 | 97.7846 | |
| gduggal-bwaplat | SNP | tv | map_l150_m2_e0 | homalt | 58.5484 | 41.3911 | 100.0000 | 86.3852 | 1690 | 2393 | 1690 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | func_cds | homalt | 99.5875 | 99.1784 | 100.0000 | 26.2009 | 1690 | 14 | 1690 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.6648 | 97.6879 | 93.7238 | 36.7934 | 1690 | 40 | 1792 | 120 | 21 | 17.5000 | |
| jlack-gatk | INDEL | D1_5 | HG002compoundhet | het | 92.3786 | 97.8009 | 87.5259 | 78.5190 | 1690 | 38 | 1691 | 241 | 200 | 82.9876 | |
| astatham-gatk | INDEL | D16_PLUS | * | homalt | 99.1187 | 99.7045 | 98.5397 | 70.8497 | 1687 | 5 | 1687 | 25 | 20 | 80.0000 | |
| ckim-gatk | INDEL | D16_PLUS | * | homalt | 99.0314 | 99.7045 | 98.3673 | 70.9863 | 1687 | 5 | 1687 | 28 | 22 | 78.5714 | |
| cchapple-custom | SNP | ti | map_l250_m2_e0 | homalt | 98.1670 | 96.4551 | 99.9407 | 84.8332 | 1687 | 62 | 1686 | 1 | 1 | 100.0000 | |