PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16501-16550 / 86044 show all | |||||||||||||||
| ckim-vqsr | SNP | tv | map_l125_m2_e0 | homalt | 44.5965 | 28.7020 | 99.9421 | 88.0225 | 1727 | 4290 | 1727 | 1 | 0 | 0.0000 | |
| egarrison-hhga | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0531 | 98.7414 | 99.3667 | 63.7370 | 1726 | 22 | 1726 | 11 | 10 | 90.9091 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.4316 | 96.3170 | 98.5722 | 66.0922 | 1726 | 66 | 1726 | 25 | 17 | 68.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0531 | 98.7414 | 99.3667 | 63.5237 | 1726 | 22 | 1726 | 11 | 10 | 90.9091 | |
| raldana-dualsentieon | SNP | tv | map_l250_m1_e0 | het | 97.2943 | 96.5865 | 98.0125 | 88.5090 | 1726 | 61 | 1726 | 35 | 1 | 2.8571 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 89.8295 | 94.2654 | 85.7923 | 82.5729 | 1726 | 105 | 1727 | 286 | 3 | 1.0490 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 33.2123 | 28.3742 | 40.0394 | 54.5997 | 1726 | 4357 | 3049 | 4566 | 3071 | 67.2580 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7975 | 99.7110 | 99.8843 | 36.2126 | 1725 | 5 | 1726 | 2 | 2 | 100.0000 | |
| ckim-isaac | SNP | ti | map_l250_m2_e0 | het | 69.1244 | 53.0117 | 99.3092 | 92.1654 | 1725 | 1529 | 1725 | 12 | 1 | 8.3333 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.0581 | 82.1038 | 84.0349 | 57.1491 | 1725 | 376 | 1637 | 311 | 307 | 98.7138 | |
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.2626 | 98.6842 | 97.8446 | 62.1511 | 1725 | 23 | 1725 | 38 | 1 | 2.6316 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7686 | 99.6532 | 99.8842 | 35.8231 | 1724 | 6 | 1725 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.8529 | 82.0562 | 83.6653 | 62.9041 | 1724 | 377 | 1680 | 328 | 287 | 87.5000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 24.0312 | 0.0000 | 0.0000 | 1724 | 5450 | 0 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.4727 | 98.6270 | 80.2142 | 81.5986 | 1724 | 24 | 1723 | 425 | 22 | 5.1765 | |
| ndellapenna-hhga | INDEL | I16_PLUS | HG002compoundhet | hetalt | 90.0250 | 82.3698 | 99.2490 | 40.2898 | 1724 | 369 | 1718 | 13 | 9 | 69.2308 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.4334 | 97.3461 | 99.5452 | 51.1660 | 1724 | 47 | 1751 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.2673 | 97.7324 | 98.8081 | 84.5914 | 1724 | 40 | 1658 | 20 | 1 | 5.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7395 | 99.5954 | 99.8841 | 36.0267 | 1723 | 7 | 1724 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l150_m0_e0 | het | 74.0589 | 60.6050 | 95.1907 | 94.3590 | 1723 | 1120 | 1722 | 87 | 5 | 5.7471 | |
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 51.2986 | 77.9991 | 38.2164 | 61.6156 | 1723 | 486 | 1727 | 2792 | 2527 | 90.5086 | |
| gduggal-bwavard | SNP | ti | map_l250_m2_e1 | homalt | 98.3428 | 97.2348 | 99.4764 | 88.0642 | 1723 | 49 | 1710 | 9 | 6 | 66.6667 | |
| gduggal-bwaplat | SNP | tv | map_l150_m2_e1 | homalt | 58.8356 | 41.6788 | 100.0000 | 86.2884 | 1723 | 2411 | 1723 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l250_m1_e0 | het | 96.5517 | 96.3626 | 96.7416 | 89.4306 | 1722 | 65 | 1722 | 58 | 11 | 18.9655 | |
| ckim-dragen | SNP | tv | map_l250_m1_e0 | het | 96.1474 | 96.3626 | 95.9331 | 90.7498 | 1722 | 65 | 1722 | 73 | 4 | 5.4795 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6240 | 99.5376 | 99.7106 | 36.1655 | 1722 | 8 | 1723 | 5 | 5 | 100.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.0177 | 97.5624 | 88.8776 | 88.4848 | 1721 | 43 | 1742 | 218 | 16 | 7.3395 | |
| dgrover-gatk | SNP | ti | map_l250_m2_e0 | homalt | 99.1074 | 98.3991 | 99.8260 | 86.5878 | 1721 | 28 | 1721 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7101 | 99.4220 | 100.0000 | 30.6569 | 1720 | 10 | 1710 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l100_m2_e1 | het | 79.3653 | 73.4102 | 86.3720 | 92.6210 | 1720 | 623 | 1876 | 296 | 32 | 10.8108 | |
| rpoplin-dv42 | SNP | ti | map_l250_m2_e0 | homalt | 98.9359 | 98.3419 | 99.5370 | 87.6280 | 1720 | 29 | 1720 | 8 | 8 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5945 | 99.3642 | 99.8259 | 36.7938 | 1719 | 11 | 1720 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.1355 | 98.3410 | 99.9430 | 61.2925 | 1719 | 29 | 1754 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5654 | 99.3064 | 99.8258 | 36.8073 | 1718 | 12 | 1719 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e0 | * | 93.0444 | 89.7128 | 96.6330 | 87.5446 | 1718 | 197 | 1722 | 60 | 7 | 11.6667 | |
| ciseli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.8951 | 98.2838 | 84.5396 | 75.5036 | 1718 | 30 | 1717 | 314 | 68 | 21.6561 | |
| gduggal-bwafb | SNP | ti | map_l250_m2_e0 | homalt | 99.0487 | 98.2276 | 99.8837 | 88.8268 | 1718 | 31 | 1718 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.9783 | 95.8147 | 98.1704 | 65.8532 | 1717 | 75 | 1717 | 32 | 26 | 81.2500 | |
| jli-custom | SNP | tv | map_l250_m1_e0 | het | 97.3617 | 96.0269 | 98.7342 | 85.3704 | 1716 | 71 | 1716 | 22 | 7 | 31.8182 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3632 | 99.1908 | 99.5362 | 36.2528 | 1716 | 14 | 1717 | 8 | 6 | 75.0000 | |
| ckim-dragen | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.8223 | 98.1693 | 99.4839 | 59.8527 | 1716 | 32 | 1735 | 9 | 2 | 22.2222 | |
| ckim-gatk | SNP | tv | map_l150_m0_e0 | het | 74.0126 | 60.3588 | 95.6497 | 94.2325 | 1716 | 1127 | 1715 | 78 | 7 | 8.9744 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 41.0970 | 29.3534 | 68.5039 | 74.9565 | 1716 | 4130 | 1479 | 680 | 172 | 25.2941 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 41.0970 | 29.3534 | 68.5039 | 74.9565 | 1716 | 4130 | 1479 | 680 | 172 | 25.2941 | |
| gduggal-snapfb | SNP | tv | map_l250_m1_e0 | het | 94.3085 | 95.9709 | 92.7027 | 86.6223 | 1715 | 72 | 1715 | 135 | 48 | 35.5556 | |
| ghariani-varprowl | SNP | ti | map_l250_m2_e1 | homalt | 98.2808 | 96.7833 | 99.8254 | 88.3683 | 1715 | 57 | 1715 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | SNP | ti | map_l250_m2_e1 | homalt | 98.2808 | 96.7833 | 99.8254 | 89.5879 | 1715 | 57 | 1715 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4204 | 99.1329 | 99.7095 | 36.8209 | 1715 | 15 | 1716 | 5 | 4 | 80.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5646 | 99.1329 | 100.0000 | 30.3228 | 1715 | 15 | 1705 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0190 | 98.1121 | 99.9429 | 58.3888 | 1715 | 33 | 1750 | 1 | 1 | 100.0000 | |