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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
16401-16450 / 86044 show all
ciseli-customSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
89.8551
98.9247
82.3088
71.2571
1748191754377114
30.2387
dgrover-gatkSNPtvmap_l250_m1_e0het
97.6809
97.8176
97.5446
90.8347
1748391748448
18.1818
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
88.3734
80.4048
98.0952
76.9380
17484261751344
11.7647
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.1773
98.9247
99.4312
56.1924
17481917481010
100.0000
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
95.5611
96.0968
95.0314
82.9837
17487115117962
78.4810
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
95.5611
96.0968
95.0314
82.9837
17487115117962
78.4810
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
90.1124
96.0968
84.8297
79.1299
1748711644294276
93.8776
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
90.1124
96.0968
84.8297
79.1299
1748711644294276
93.8776
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.7850
99.0930
98.4789
88.6741
17481617482712
44.4444
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.4025
98.8681
99.9427
55.9677
174720174410
0.0000
qzeng-customSNPtvmap_l250_m1_e0*
76.9830
65.9992
92.3526
95.3560
17479001739144117
81.2500
ghariani-varprowlINDELD1_5map_l100_m1_e0*
91.4375
94.4805
88.5845
86.5571
1746102174622565
28.8889
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.3939
98.9796
97.8151
89.1397
17461817463921
53.8462
eyeh-varpipeSNPtimap_l250_m2_e0homalt
99.8276
99.7713
99.8839
88.9360
17454172122
100.0000
gduggal-snapvardINDELD1_5map_l100_m1_e0*
88.9711
94.4264
84.1118
85.2613
17451032197415169
40.7229
rpoplin-dv42SNPtvmap_l250_m1_e0het
97.6497
97.6497
97.6497
86.6731
17454217454226
61.9048
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
88.4263
79.6804
99.3289
28.2061
174544519241311
84.6154
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.3449
98.6984
100.0000
53.9460
174423173900
hfeng-pmm2SNPtvmap_l250_m1_e0het
97.7031
97.5937
97.8127
89.8457
1744431744392
5.1282
dgrover-gatkSNPtimap_l250_m2_e1homalt
99.1191
98.4199
99.8283
86.6233
174428174432
66.6667
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
89.5049
98.6984
81.8782
76.1990
174423173538449
12.7604
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
40.9601
29.3830
67.5918
54.6739
174341891583759616
81.1594
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.0341
98.8095
99.2597
89.1343
17432117431310
76.9231
rpoplin-dv42SNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.7997
99.7140
99.8855
65.5220
17435174521
50.0000
rpoplin-dv42SNPtimap_l250_m2_e1homalt
98.9217
98.3634
99.4863
87.6793
174329174399
100.0000
ciseli-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
51.0479
89.1961
35.7556
37.7138
1742211173231122889
92.8342
hfeng-pmm2SNPtimap_l250_m2_e0homalt
99.5429
99.5998
99.4860
87.7706
17427174292
22.2222
hfeng-pmm3SNPtimap_l250_m2_e0homalt
99.5429
99.5998
99.4860
87.7295
17427174292
22.2222
hfeng-pmm1SNPtvmap_l250_m1_e0het
98.1685
97.4818
98.8649
87.9315
1742451742202
10.0000
ghariani-varprowlSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
97.4028
99.6568
95.2485
71.4664
1742617448749
56.3218
jpowers-varprowlSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.4333
99.6568
93.4119
74.1305
17426174412351
41.4634
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
98.0184
98.5852
97.4582
45.8333
17422514573811
28.9474
egarrison-hhgaINDELI16_PLUS*hetalt
90.0034
83.0315
98.2535
51.8970
174235617443126
83.8710
hfeng-pmm1SNPtimap_l250_m2_e0homalt
99.5141
99.5426
99.4857
87.7793
17418174192
22.2222
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.1176
98.5286
99.7136
61.8611
174126174155
100.0000
ltrigg-rtg1SNPtimap_l250_m2_e0homalt
99.6280
99.5426
99.7136
87.3322
17418174155
100.0000
jmaeng-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.7420
99.5423
99.9426
61.0950
17408174011
100.0000
raldana-dualsentieonSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.7135
99.5423
99.8852
59.7783
17408174021
50.0000
asubramanian-gatkINDELD1_5map_l100_m2_e1*
93.0516
89.7370
96.6205
87.5894
17401991744617
11.4754
ltrigg-rtg2SNPtimap_l250_m2_e0homalt
99.6564
99.4854
99.8279
85.6390
17409174033
100.0000
ckim-gatkSNPtimap_l250_m1_e0het
72.9254
58.6253
96.4523
96.6462
174012281740648
12.5000
gduggal-bwafbSNPtimap_l250_m2_e1homalt
99.0324
98.1941
99.8852
88.8818
174032174022
100.0000
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
78.2077
80.0368
76.4603
79.5968
174043417415366
1.1194
hfeng-pmm2SNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6849
99.5423
99.8279
67.4388
17408174031
33.3333
jli-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.7133
99.4851
99.9425
62.4676
17399173911
100.0000
cchapple-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6843
99.4279
99.9421
53.0723
173810172511
100.0000
ckim-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6558
99.3707
99.9425
60.9877
173711173711
100.0000
hfeng-pmm1SNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6558
99.3707
99.9425
65.7132
173711173711
100.0000
hfeng-pmm3SNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6272
99.3707
99.8850
65.1363
173711173721
50.0000
jlack-gatkSNPtvmap_l250_m1_e0het
88.8718
97.2020
81.8567
93.7753
173750173738518
4.6753