PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15851-15900 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I6_15 | HG002complexvar | het | 83.9009 | 81.8684 | 86.0369 | 46.7354 | 1928 | 427 | 1867 | 303 | 298 | 98.3498 | |
| jpowers-varprowl | INDEL | * | map_l125_m1_e0 | * | 93.0277 | 91.5045 | 94.6026 | 87.5701 | 1928 | 179 | 1928 | 110 | 77 | 70.0000 | |
| ckim-gatk | INDEL | I16_PLUS | HG002compoundhet | hetalt | 95.8494 | 92.1166 | 99.8975 | 44.7808 | 1928 | 165 | 1950 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | * | map_l250_m1_e0 | homalt | 80.5510 | 78.2785 | 82.9594 | 86.9401 | 1928 | 535 | 1923 | 395 | 279 | 70.6329 | |
| asubramanian-gatk | INDEL | * | map_l125_m2_e1 | * | 91.1601 | 86.6517 | 96.1634 | 97.1389 | 1928 | 297 | 1930 | 77 | 8 | 10.3896 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5099 | 97.8184 | 99.2114 | 76.2576 | 1928 | 43 | 1887 | 15 | 6 | 40.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5099 | 97.8184 | 99.2114 | 76.2576 | 1928 | 43 | 1887 | 15 | 6 | 40.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 75.9223 | 95.2075 | 63.1339 | 85.1688 | 1927 | 97 | 1942 | 1134 | 22 | 1.9400 | |
| hfeng-pmm3 | SNP | tv | map_l250_m2_e1 | het | 98.4670 | 98.0662 | 98.8712 | 88.6090 | 1927 | 38 | 1927 | 22 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5612 | 97.7676 | 99.3678 | 76.3607 | 1927 | 44 | 1886 | 12 | 6 | 50.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5612 | 97.7676 | 99.3678 | 76.3607 | 1927 | 44 | 1886 | 12 | 6 | 50.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | HG002compoundhet | hetalt | 95.7976 | 92.0210 | 99.8974 | 44.8061 | 1926 | 167 | 1948 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | tv | map_l250_m2_e1 | het | 97.7665 | 98.0153 | 97.5190 | 91.3080 | 1926 | 39 | 1926 | 49 | 9 | 18.3673 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 90.7380 | 98.6175 | 84.0244 | 38.7433 | 1926 | 27 | 1925 | 366 | 364 | 99.4536 | |
| anovak-vg | INDEL | I6_15 | HG002compoundhet | hetalt | 0.0000 | 22.5606 | 0.0000 | 0.0000 | 1926 | 6611 | 0 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | * | hetalt | 95.5588 | 91.7541 | 99.6928 | 55.4720 | 1925 | 173 | 1947 | 6 | 5 | 83.3333 | |
| gduggal-bwavard | SNP | tv | map_l250_m2_e1 | het | 85.2663 | 97.9135 | 75.5126 | 92.7832 | 1924 | 41 | 1915 | 621 | 13 | 2.0934 | |
| mlin-fermikit | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.4400 | 95.0593 | 97.8615 | 70.2740 | 1924 | 100 | 1922 | 42 | 5 | 11.9048 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e1 | het | 97.8128 | 97.8626 | 97.7631 | 87.3293 | 1923 | 42 | 1923 | 44 | 28 | 63.6364 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 80.9919 | 72.4294 | 91.8503 | 55.9362 | 1923 | 732 | 2209 | 196 | 151 | 77.0408 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e1 | * | 98.8190 | 99.1233 | 98.5166 | 84.7206 | 1922 | 17 | 1926 | 29 | 6 | 20.6897 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.0970 | 98.4127 | 99.7908 | 31.1983 | 1922 | 31 | 1908 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | SNP | tv | map_l250_m2_e1 | het | 97.7868 | 97.8117 | 97.7620 | 90.3675 | 1922 | 43 | 1922 | 44 | 3 | 6.8182 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e1 | * | 98.7423 | 99.0717 | 98.4151 | 83.8640 | 1921 | 18 | 1925 | 31 | 4 | 12.9032 | |
| jmaeng-gatk | INDEL | I16_PLUS | HG002compoundhet | hetalt | 95.6914 | 91.7821 | 99.9485 | 44.7982 | 1921 | 172 | 1941 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.1487 | 97.4632 | 98.8439 | 76.5004 | 1921 | 50 | 1881 | 22 | 11 | 50.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.1487 | 97.4632 | 98.8439 | 76.5004 | 1921 | 50 | 1881 | 22 | 11 | 50.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m1_e0 | homalt | 87.5513 | 77.9537 | 99.8439 | 88.7661 | 1920 | 543 | 1919 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m2_e1 | het | 98.2088 | 97.6590 | 98.7648 | 88.3806 | 1919 | 46 | 1919 | 24 | 3 | 12.5000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e1 | * | 99.0966 | 98.9170 | 99.2769 | 81.5232 | 1918 | 21 | 1922 | 14 | 3 | 21.4286 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 40.0753 | 30.3227 | 59.0755 | 67.9189 | 1917 | 4405 | 1917 | 1328 | 1307 | 98.4187 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 40.0753 | 30.3227 | 59.0755 | 67.9189 | 1917 | 4405 | 1917 | 1328 | 1307 | 98.4187 | |
| astatham-gatk | SNP | * | map_l250_m0_e0 | * | 93.8786 | 89.7892 | 98.3581 | 93.7904 | 1917 | 218 | 1917 | 32 | 8 | 25.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e1 | * | 98.8405 | 98.8138 | 98.8671 | 85.4314 | 1916 | 23 | 1920 | 22 | 5 | 22.7273 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 82.7487 | 71.4392 | 98.3125 | 49.4079 | 1916 | 766 | 1806 | 31 | 20 | 64.5161 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 82.0159 | 72.4008 | 94.5759 | 92.8167 | 1915 | 730 | 1918 | 110 | 13 | 11.8182 | |
| jlack-gatk | SNP | tv | map_l250_m2_e1 | het | 89.2982 | 97.4555 | 82.4010 | 94.1598 | 1915 | 50 | 1915 | 409 | 18 | 4.4010 | |
| ckim-dragen | INDEL | I16_PLUS | * | hetalt | 95.3433 | 91.2297 | 99.8454 | 58.3691 | 1914 | 184 | 1937 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m2_e1 | * | 97.0144 | 98.7107 | 95.3754 | 88.2617 | 1914 | 25 | 1918 | 93 | 8 | 8.6022 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.8636 | 98.0031 | 99.7394 | 39.6351 | 1914 | 39 | 1914 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e1 | * | 98.7364 | 98.6591 | 98.8138 | 83.7031 | 1913 | 26 | 1916 | 23 | 9 | 39.1304 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 86.0985 | 86.5550 | 85.6468 | 63.2965 | 1912 | 297 | 1993 | 334 | 189 | 56.5868 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002compoundhet | * | 92.4081 | 89.1741 | 95.8856 | 50.9476 | 1911 | 232 | 1911 | 82 | 81 | 98.7805 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.6568 | 96.9051 | 98.4202 | 76.2358 | 1910 | 61 | 1869 | 30 | 19 | 63.3333 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.6568 | 96.9051 | 98.4202 | 76.2358 | 1910 | 61 | 1869 | 30 | 19 | 63.3333 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e1 | * | 95.2916 | 98.5044 | 92.2817 | 87.3451 | 1910 | 29 | 1913 | 160 | 11 | 6.8750 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.1674 | 71.9397 | 88.0095 | 54.7793 | 1910 | 745 | 1857 | 253 | 201 | 79.4466 | |
| ckim-dragen | INDEL | I16_PLUS | HG002compoundhet | hetalt | 95.4049 | 91.2566 | 99.9482 | 45.8824 | 1910 | 183 | 1931 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e1 | * | 98.6576 | 98.5044 | 98.8114 | 83.1328 | 1910 | 29 | 1912 | 23 | 8 | 34.7826 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.8091 | 97.7471 | 99.8946 | 29.7927 | 1909 | 44 | 1895 | 2 | 2 | 100.0000 | |