PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15351-15400 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 63.8520 | 52.6367 | 81.1407 | 57.2311 | 2146 | 1931 | 3201 | 744 | 345 | 46.3710 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 69.0793 | 87.2712 | 57.1635 | 56.5737 | 2146 | 313 | 6735 | 5047 | 4364 | 86.4672 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7905 | 99.6747 | 99.9066 | 41.3311 | 2145 | 7 | 2140 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.5286 | 88.9672 | 94.2418 | 58.4475 | 2145 | 266 | 2144 | 131 | 120 | 91.6031 | |
| cchapple-custom | INDEL | D16_PLUS | HG002compoundhet | * | 93.0802 | 91.6275 | 94.5797 | 31.0588 | 2145 | 196 | 2408 | 138 | 135 | 97.8261 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e0 | * | 98.0800 | 97.6321 | 98.5321 | 98.7156 | 2144 | 52 | 2148 | 32 | 13 | 40.6250 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.8673 | 90.5405 | 99.6283 | 86.5685 | 2144 | 224 | 2144 | 8 | 3 | 37.5000 | |
| gduggal-bwaplat | SNP | * | map_l250_m2_e1 | het | 57.7898 | 40.7295 | 99.4439 | 97.7262 | 2144 | 3120 | 2146 | 12 | 3 | 25.0000 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6976 | 99.5818 | 99.8136 | 41.7639 | 2143 | 9 | 2142 | 4 | 4 | 100.0000 | |
| ciseli-custom | SNP | * | map_l250_m2_e1 | homalt | 81.0638 | 78.8447 | 83.4114 | 87.8871 | 2143 | 575 | 2137 | 425 | 307 | 72.2353 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 84.3152 | 93.7856 | 76.5821 | 40.7415 | 2143 | 142 | 2142 | 655 | 651 | 99.3893 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7439 | 99.5818 | 99.9065 | 40.0728 | 2143 | 9 | 2138 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2731 | 99.5818 | 98.9663 | 47.1998 | 2143 | 9 | 2202 | 23 | 5 | 21.7391 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.7674 | 88.8428 | 97.0548 | 55.8776 | 2142 | 269 | 2142 | 65 | 63 | 96.9231 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e0 | * | 97.8100 | 97.5410 | 98.0804 | 98.3346 | 2142 | 54 | 2146 | 42 | 15 | 35.7143 | |
| ckim-vqsr | INDEL | * | map_l100_m1_e0 | het | 96.2709 | 95.7942 | 96.7524 | 90.3659 | 2141 | 94 | 2145 | 72 | 11 | 15.2778 | |
| ckim-vqsr | INDEL | * | map_l125_m2_e1 | * | 96.8133 | 96.2247 | 97.4091 | 91.7742 | 2141 | 84 | 2143 | 57 | 8 | 14.0351 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 83.4557 | 90.3376 | 77.5481 | 56.6986 | 2141 | 229 | 2138 | 619 | 618 | 99.8384 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7438 | 99.4888 | 100.0000 | 45.1051 | 2141 | 11 | 2142 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l100_m1_e0 | het | 96.1706 | 95.7494 | 96.5955 | 81.6758 | 2140 | 95 | 2894 | 102 | 68 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.4345 | 88.7599 | 98.6289 | 56.3012 | 2140 | 271 | 2158 | 30 | 18 | 60.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.5033 | 98.3901 | 98.6169 | 63.5523 | 2139 | 35 | 2139 | 30 | 19 | 63.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 98.6633 | 97.6712 | 99.6756 | 43.8460 | 2139 | 51 | 2151 | 7 | 6 | 85.7143 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8130 | 100.0000 | 99.6267 | 42.4234 | 2138 | 0 | 2135 | 8 | 2 | 25.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7664 | 100.0000 | 99.5338 | 39.4410 | 2138 | 0 | 2135 | 10 | 2 | 20.0000 | |
| eyeh-varpipe | INDEL | * | map_l125_m2_e1 | * | 96.4393 | 96.0449 | 96.8369 | 94.4522 | 2137 | 88 | 2939 | 96 | 68 | 70.8333 | |
| ckim-vqsr | SNP | ti | map_l250_m2_e0 | * | 59.5430 | 42.6717 | 98.4793 | 97.0358 | 2137 | 2871 | 2137 | 33 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8363 | 99.9532 | 99.7196 | 42.4576 | 2137 | 1 | 2134 | 6 | 2 | 33.3333 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.9532 | 99.9532 | 99.9531 | 38.2523 | 2137 | 1 | 2133 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5336 | 99.9532 | 99.1175 | 38.8352 | 2137 | 1 | 2134 | 19 | 2 | 10.5263 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e1 | het | 92.9455 | 91.2079 | 94.7505 | 82.9512 | 2137 | 206 | 2184 | 121 | 22 | 18.1818 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8363 | 99.9065 | 99.7662 | 76.2965 | 2136 | 2 | 2134 | 5 | 1 | 20.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8597 | 99.9065 | 99.8129 | 76.6441 | 2136 | 2 | 2134 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.9064 | 99.9065 | 99.9064 | 76.8906 | 2136 | 2 | 2134 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8597 | 99.9065 | 99.8129 | 76.8740 | 2136 | 2 | 2134 | 4 | 1 | 25.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.0481 | 99.9065 | 98.2044 | 43.3046 | 2136 | 2 | 2133 | 39 | 2 | 5.1282 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8362 | 99.8597 | 99.8128 | 76.4258 | 2135 | 3 | 2133 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2813 | 99.8597 | 98.7097 | 43.7241 | 2135 | 3 | 2142 | 28 | 3 | 10.7143 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.2187 | 99.8597 | 96.6309 | 38.9931 | 2135 | 3 | 1979 | 69 | 6 | 8.6957 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e0 | * | 97.8027 | 97.2222 | 98.3901 | 85.9597 | 2135 | 61 | 2139 | 35 | 6 | 17.1429 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6745 | 99.8597 | 99.4900 | 40.5130 | 2135 | 3 | 2146 | 11 | 4 | 36.3636 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.7661 | 99.8597 | 99.6727 | 76.2860 | 2135 | 3 | 2132 | 7 | 1 | 14.2857 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6261 | 99.8129 | 99.4400 | 42.7465 | 2134 | 4 | 2131 | 12 | 2 | 16.6667 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8830 | 99.8129 | 99.9531 | 76.9081 | 2134 | 4 | 2132 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.4735 | 88.5110 | 99.0255 | 55.9755 | 2134 | 277 | 2134 | 21 | 19 | 90.4762 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.0670 | 99.1636 | 96.9944 | 39.3861 | 2134 | 18 | 2969 | 92 | 42 | 45.6522 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5345 | 99.7661 | 99.3039 | 36.1103 | 2133 | 5 | 2140 | 15 | 2 | 13.3333 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8361 | 99.7661 | 99.9062 | 74.5708 | 2133 | 5 | 2131 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5795 | 99.7661 | 99.3937 | 76.6906 | 2133 | 5 | 2131 | 13 | 5 | 38.4615 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6037 | 99.7194 | 99.4884 | 35.8783 | 2132 | 6 | 2139 | 11 | 2 | 18.1818 | |