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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
15151-15200 / 86044 show all
asubramanian-gatkINDELD16_PLUSHG002compoundhet*
94.4206
93.9769
94.8685
35.6370
22001412200119109
91.5966
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
97.9539
97.6909
98.2183
50.5289
22005222054032
80.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9319
99.9546
99.9092
41.8384
22001220022
100.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9319
99.9546
99.9092
41.9457
22001220022
100.0000
dgrover-gatkINDEL*map_l100_m1_e0het
98.1505
98.3893
97.9130
86.6398
21993622054710
21.2766
asubramanian-gatkSNP*map_l150_m1_e0homalt
32.6455
19.5068
100.0000
91.9371
21999074219900
ckim-dragenSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8865
99.9091
99.8638
42.0263
21992220033
100.0000
ghariani-varprowlSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.1675
99.9091
98.4368
44.5929
2199222043513
37.1429
hfeng-pmm1SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9318
99.9091
99.9545
42.4084
21992219911
100.0000
hfeng-pmm2SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9318
99.9091
99.9545
42.7232
21992219911
100.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9318
99.9091
99.9545
42.3026
21992219911
100.0000
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
81.7039
73.7672
91.5543
53.9843
21997821290119114
95.7983
eyeh-varpipeSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7733
99.9091
99.6378
40.5384
21992220184
50.0000
jli-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8864
99.9091
99.8638
41.8076
21992219932
66.6667
jpowers-varprowlSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.5482
99.9091
99.1899
44.8772
2199222041812
66.6667
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.6307
91.1655
96.2330
58.6113
219821321978683
96.5116
astatham-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8864
99.8637
99.9091
41.9065
21983219822
100.0000
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.4705
97.6021
99.3545
52.3611
2198542155147
50.0000
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.7414
97.6021
99.9075
50.0923
219854216120
0.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9318
99.8637
100.0000
42.6858
21983219800
egarrison-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8183
99.8183
99.8183
42.3560
21974219843
75.0000
hfeng-pmm3INDEL*map_l100_m1_e0het
98.5219
98.2998
98.7450
82.8675
2197382203285
17.8571
gduggal-bwafbINDEL*map_l100_m2_e1het
95.8207
93.7687
97.9645
83.6078
21971462262478
17.0213
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
62.7001
46.0184
98.3531
38.3761
2196257619113229
90.6250
bgallagher-sentieonINDEL*map_l125_m2_e1*
98.3668
98.6966
98.0392
88.5574
2196292200449
20.4545
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
96.1174
96.1050
96.1298
45.0129
21968924599935
35.3535
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7955
99.7728
99.8183
42.2613
21965219743
75.0000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8863
99.7728
100.0000
39.6930
21965220000
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8635
99.7274
100.0000
40.2446
21956219900
jmaeng-gatkINDEL*map_l100_m1_e0het
96.0483
98.2103
93.9795
90.0412
219540220114114
9.9291
gduggal-snapfbSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.5691
99.7274
99.4112
46.0147
219562195136
46.1538
jlack-gatkINDEL*map_l100_m1_e0het
93.6574
98.2103
89.5079
89.1540
219540220125820
7.7519
dgrover-gatkSNPtvmap_l125_m0_e0homalt
99.2760
98.7843
99.7726
69.4073
219427219453
60.0000
gduggal-bwafbSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7273
99.6820
99.7726
43.0753
21947219454
80.0000
ckim-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7953
99.6820
99.9089
42.1496
21947219422
100.0000
ghariani-varprowlINDEL*map_l100_m1_e0het
90.5454
98.1655
84.0230
89.3321
2194412193417195
46.7626
jmaeng-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7953
99.6820
99.9089
42.1191
21947219422
100.0000
gduggal-bwavardINDEL*map_l100_m1_e0het
89.9219
98.1208
82.9876
89.4070
2193422200451184
40.7982
hfeng-pmm2INDEL*map_l125_m2_e1*
98.2545
98.5618
97.9492
88.0799
2193322197467
15.2174
jli-customINDEL*map_l100_m1_e0het
98.3638
98.1208
98.6080
83.1747
2193422196319
29.0323
qzeng-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7726
99.6365
99.9090
41.7859
21938219521
50.0000
mlin-fermikitSNPtvmap_l100_m0_e0homalt
61.5471
56.9943
66.8904
49.7701
21921654219210851011
93.1797
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
53.7340
37.1777
96.8750
57.0119
21923704331710799
92.5234
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
53.7340
37.1777
96.8750
57.0119
21923704331710799
92.5234
ckim-gatkINDEL*map_l125_m2_e1*
96.6536
98.5169
94.8596
91.3812
219233219611911
9.2437
ciseli-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
98.1931
99.5911
96.8338
44.7388
2192922027234
47.2222
ckim-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.5308
99.1852
92.1362
66.1398
2191182191187184
98.3957
ckim-vqsrINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.5725
99.1852
92.2138
66.1587
2191182191185182
98.3784
ckim-isaacINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
89.1293
81.6555
98.1092
39.4326
219049222834437
84.0909
hfeng-pmm3INDEL*map_l125_m2_e1*
98.5832
98.4270
98.7399
86.2184
2190352194286
21.4286