PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15101-15150 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 41.5500 | 37.4241 | 46.6984 | 73.3990 | 2220 | 3712 | 2256 | 2575 | 311 | 12.0777 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 95.2177 | 93.7500 | 96.7320 | 83.6118 | 2220 | 148 | 2220 | 75 | 48 | 64.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.3317 | 97.1116 | 95.5642 | 35.5358 | 2219 | 66 | 2219 | 103 | 98 | 95.1456 | |
| bgallagher-sentieon | INDEL | D16_PLUS | HG002compoundhet | * | 95.0525 | 94.7886 | 95.3179 | 35.3692 | 2219 | 122 | 2219 | 109 | 106 | 97.2477 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.3452 | 92.0365 | 96.7728 | 58.9950 | 2219 | 192 | 2219 | 74 | 70 | 94.5946 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.4371 | 91.9154 | 99.2394 | 60.4914 | 2217 | 195 | 2218 | 17 | 11 | 64.7059 | |
| gduggal-snapfb | INDEL | * | HG002complexvar | hetalt | 65.6662 | 59.9081 | 72.6490 | 79.8155 | 2216 | 1483 | 1097 | 413 | 281 | 68.0387 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 44.8723 | 35.0206 | 62.4365 | 72.5902 | 2214 | 4108 | 2214 | 1332 | 1288 | 96.6967 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 44.8723 | 35.0206 | 62.4365 | 72.5902 | 2214 | 4108 | 2214 | 1332 | 1288 | 96.6967 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | homalt | 99.7971 | 99.6398 | 99.9548 | 70.1295 | 2213 | 8 | 2213 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e1 | het | 96.7209 | 94.4516 | 99.1019 | 77.2848 | 2213 | 130 | 2207 | 20 | 2 | 10.0000 | |
| asubramanian-gatk | SNP | tv | map_l100_m0_e0 | het | 46.8906 | 30.6425 | 99.8196 | 93.3017 | 2213 | 5009 | 2213 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 82.0492 | 96.8053 | 71.1966 | 41.3611 | 2212 | 73 | 3552 | 1437 | 1234 | 85.8733 | |
| gduggal-bwavard | INDEL | I6_15 | HG002complexvar | het | 78.6071 | 93.9278 | 67.5834 | 56.2348 | 2212 | 143 | 2187 | 1049 | 981 | 93.5176 | |
| eyeh-varpipe | SNP | tv | map_l125_m0_e0 | homalt | 99.6613 | 99.5948 | 99.7279 | 75.3135 | 2212 | 9 | 2199 | 6 | 2 | 33.3333 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002complexvar | het | 81.8591 | 70.8654 | 96.8901 | 67.2923 | 2211 | 909 | 2212 | 71 | 24 | 33.8028 | |
| ckim-dragen | INDEL | D16_PLUS | HG002compoundhet | * | 94.5882 | 94.4468 | 94.7301 | 35.7379 | 2211 | 130 | 2211 | 123 | 120 | 97.5610 | |
| hfeng-pmm2 | SNP | tv | map_l125_m0_e0 | homalt | 99.5050 | 99.5498 | 99.4602 | 72.5691 | 2211 | 10 | 2211 | 12 | 4 | 33.3333 | |
| hfeng-pmm1 | SNP | tv | map_l125_m0_e0 | homalt | 99.5050 | 99.5498 | 99.4602 | 72.4501 | 2211 | 10 | 2211 | 12 | 4 | 33.3333 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 70.4099 | 93.3699 | 56.5131 | 85.6582 | 2211 | 157 | 2269 | 1746 | 174 | 9.9656 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | homalt | 99.7066 | 99.4597 | 99.9548 | 66.5911 | 2209 | 12 | 2209 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 92.8940 | 87.0028 | 99.6409 | 34.1996 | 2209 | 330 | 2220 | 8 | 8 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | map_l125_m0_e0 | homalt | 99.4597 | 99.4597 | 99.4597 | 72.3171 | 2209 | 12 | 2209 | 12 | 4 | 33.3333 | |
| ckim-vqsr | INDEL | * | map_l100_m2_e0 | het | 96.2758 | 95.7521 | 96.8053 | 90.9383 | 2209 | 98 | 2212 | 73 | 11 | 15.0685 | |
| jpowers-varprowl | INDEL | D1_5 | map_siren | het | 95.3594 | 97.0136 | 93.7606 | 83.6842 | 2209 | 68 | 2209 | 147 | 108 | 73.4694 | |
| egarrison-hhga | SNP | tv | map_l125_m0_e0 | homalt | 99.6615 | 99.4147 | 99.9095 | 69.6595 | 2208 | 13 | 2208 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_l125_m0_e0 | homalt | 99.6165 | 99.4147 | 99.8192 | 66.9456 | 2208 | 13 | 2208 | 4 | 2 | 50.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 66.8635 | 56.6333 | 81.6046 | 52.1656 | 2207 | 1690 | 1424 | 321 | 304 | 94.7040 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.7925 | 91.4973 | 96.2058 | 58.9950 | 2206 | 205 | 2206 | 87 | 83 | 95.4023 | |
| ckim-dragen | SNP | tv | map_l125_m0_e0 | homalt | 99.4590 | 99.3246 | 99.5937 | 66.7118 | 2206 | 15 | 2206 | 9 | 7 | 77.7778 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e0 | het | 96.1330 | 95.6220 | 96.6495 | 82.3053 | 2206 | 101 | 3000 | 104 | 69 | 66.3462 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_siren | het | 97.9324 | 96.8819 | 99.0059 | 74.1048 | 2206 | 71 | 2191 | 22 | 1 | 4.5455 | |
| jli-custom | SNP | tv | map_l125_m0_e0 | homalt | 99.5485 | 99.2796 | 99.8189 | 66.7820 | 2205 | 16 | 2205 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | map_l100_m1_e0 | het | 98.0470 | 98.6577 | 97.4438 | 85.8435 | 2205 | 30 | 2211 | 58 | 11 | 18.9655 | |
| bgallagher-sentieon | SNP | tv | map_l125_m0_e0 | homalt | 99.5036 | 99.2796 | 99.7286 | 68.6827 | 2205 | 16 | 2205 | 6 | 4 | 66.6667 | |
| gduggal-snapvard | INDEL | * | map_l100_m2_e1 | het | 84.8243 | 94.1101 | 77.2064 | 88.4817 | 2205 | 138 | 3123 | 922 | 425 | 46.0954 | |
| mlin-fermikit | SNP | tv | map_l150_m2_e1 | homalt | 60.4772 | 53.3382 | 69.8227 | 60.3864 | 2205 | 1929 | 2205 | 953 | 885 | 92.8646 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.9843 | 91.4144 | 98.8444 | 52.1785 | 2204 | 207 | 2224 | 26 | 17 | 65.3846 | |
| gduggal-snapvard | INDEL | * | map_siren | homalt | 89.9289 | 83.0132 | 98.1015 | 71.6674 | 2204 | 451 | 2377 | 46 | 40 | 86.9565 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 31.6043 | 34.3302 | 29.2795 | 88.3797 | 2204 | 4216 | 2292 | 5536 | 84 | 1.5173 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 31.6043 | 34.3302 | 29.2795 | 88.3797 | 2204 | 4216 | 2292 | 5536 | 84 | 1.5173 | |
| jmaeng-gatk | INDEL | D16_PLUS | HG002compoundhet | * | 94.6939 | 94.1478 | 95.2463 | 35.4713 | 2204 | 137 | 2204 | 110 | 109 | 99.0909 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.1277 | 91.4144 | 97.0070 | 58.8480 | 2204 | 207 | 2204 | 68 | 66 | 97.0588 | |
| ckim-gatk | INDEL | * | map_l100_m1_e0 | het | 96.1061 | 98.6130 | 93.7235 | 89.8156 | 2204 | 31 | 2210 | 148 | 14 | 9.4595 | |
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | homalt | 99.5256 | 99.1896 | 99.8640 | 68.2316 | 2203 | 18 | 2203 | 3 | 2 | 66.6667 | |
| ckim-isaac | SNP | ti | map_l125_m0_e0 | homalt | 65.7804 | 49.0314 | 99.9093 | 59.9855 | 2202 | 2289 | 2202 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9319 | 100.0000 | 99.8639 | 41.8470 | 2201 | 0 | 2201 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | map_l100_m1_e0 | het | 98.0433 | 98.4787 | 97.6117 | 85.3524 | 2201 | 34 | 2207 | 54 | 7 | 12.9630 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8863 | 99.9546 | 99.8181 | 38.5067 | 2200 | 1 | 2195 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9319 | 99.9546 | 99.9092 | 41.9151 | 2200 | 1 | 2200 | 2 | 2 | 100.0000 | |