PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
101-150 / 86044 show all
mlin-fermikitSNP**het
98.7978
97.7460
99.8724
15.9070
1831370422311831279234046
1.9658
ckim-isaacSNP**het
98.6547
97.3796
99.9637
16.8583
182450549096182510166363
9.5023
eyeh-varpipeSNPti*het
99.6284
99.9615
99.2976
20.5443
128140449312643368944171
1.9119
bgallagher-sentieonSNPti*het
99.9232
99.9613
99.8851
18.4052
12813954961281341147476
5.1560
dgrover-gatkSNPti*het
99.9394
99.9568
99.9221
18.8587
1281337554128128399987
8.7087
ckim-dragenSNPti*het
99.7466
99.9566
99.5375
22.8315
128133555612814945955318
5.3401
jli-customSNPti*het
99.9331
99.9539
99.9123
17.4772
12813005911281266112587
7.7333
jlack-gatkSNPti*het
99.6581
99.9316
99.3861
24.9292
128101487712809607913288
3.6396
rpoplin-dv42SNPti*het
99.9511
99.9279
99.9742
18.1937
12809679241280907330164
49.6970
hfeng-pmm3SNPti*het
99.9388
99.9112
99.9664
17.2454
12807531138128070343018
4.1861
hfeng-pmm2SNPti*het
99.9215
99.8989
99.9442
17.8405
12805951296128054571524
3.3566
hfeng-pmm1SNPti*het
99.9312
99.8931
99.9694
16.7684
12805211370128047039229
7.3980
raldana-dualsentieonSNPti*het
99.9019
99.8809
99.9229
17.7757
12803641527128031398821
2.1255
cchapple-customSNPti*het
99.8339
99.8795
99.7883
21.7295
1280346154512803842716443
16.3108
ghariani-varprowlSNPti*het
99.3626
99.8721
98.8582
25.2183
12802371639128041714789277
1.8730
gduggal-bwafbSNPti*het
99.7363
99.8649
99.6080
22.2231
1280165173212802845038382
7.5824
ltrigg-rtg2SNPti*het
99.8504
99.8647
99.8361
15.7716
128015917351280167210175
3.5697
ltrigg-rtg1SNPti*het
99.8539
99.8618
99.8460
16.3632
128012317711280140197552
2.6329
egarrison-hhgaSNPti*het
99.8877
99.8228
99.9527
17.2025
12796192272127962260680
13.2013
gduggal-snapfbSNPti*het
99.2278
99.8088
98.6535
22.6951
12794462451127998017470996
5.7012
ndellapenna-hhgaSNPti*het
99.8668
99.7824
99.9512
16.9483
12791022789127910362483
13.3013
ckim-gatkSNPti*het
99.7182
99.6780
99.7585
24.7182
1277763412812777133093133
4.3000
jmaeng-gatkSNPti*het
99.6655
99.6418
99.6893
25.0371
1277299459212772493981127
3.1902
jpowers-varprowlSNPti*het
99.4145
99.3343
99.4948
22.7953
1273353853412735116466293
4.5314
qzeng-customSNPti*het
99.4567
99.1981
99.7166
23.5601
12716181027912696813608520
14.4124
ckim-vqsrSNPti*het
99.5238
99.1280
99.9229
24.8520
127071311178127066598162
6.3201
gduggal-bwavardSNPti*het
99.2556
99.0550
99.4571
24.6552
126978312114126578969102002
28.9725
gduggal-snapvardSNPti*het
98.9307
98.9471
98.9142
25.7701
1268399134971263991138752046
14.7459
gduggal-snapplatSNPti*het
98.9857
98.8246
99.1474
28.1840
1266829150681267456108991576
14.4600
astatham-gatkSNPti*het
99.3889
98.8086
99.9762
18.5890
126661815273126656330260
19.8675
ciseli-customSNPti*het
97.9524
98.4710
97.4391
21.0644
126229719600125985833111542
1.6369
gduggal-bwaplatSNPti*het
98.9567
98.3966
99.5232
28.0886
12613372055412619236046762
12.6034
asubramanian-gatkSNPti*het
99.0688
98.2225
99.9298
21.0842
125910522786125905588467
7.5792
anovak-vgSNPti*het
98.0963
98.0413
98.1515
22.3908
1256788251091253632236109204
38.9835
mlin-fermikitSNPti*het
98.8419
97.7886
99.9182
14.5462
1253549283481253519102632
3.1189
ckim-isaacSNPti*het
98.7325
97.5284
99.9667
15.6908
125021431683125052541731
7.4341
hfeng-pmm2SNP**homalt
99.9900
99.9890
99.9910
18.1427
1180031130118001810672
67.9245
hfeng-pmm3SNP**homalt
99.9916
99.9889
99.9942
17.9575
118003013111800136845
66.1765
hfeng-pmm1SNP**homalt
99.9908
99.9886
99.9929
18.0449
118002713411800138456
66.6667
raldana-dualsentieonSNP**homalt
99.9888
99.9827
99.9949
17.0955
117995720411799436053
88.3333
bgallagher-sentieonSNP**homalt
99.9858
99.9781
99.9936
17.1960
117990225911798787666
86.8421
jli-customSNP**homalt
99.9850
99.9771
99.9928
17.2570
117989127011798758566
77.6471
dgrover-gatkSNP**homalt
99.9839
99.9740
99.9938
17.2643
117985430711798307363
86.3014
rpoplin-dv42SNP**homalt
99.9769
99.9716
99.9821
18.2100
11798263351179802211157
74.4076
eyeh-varpipeSNP**homalt
99.9696
99.9699
99.9693
17.3914
11798073551154702355142
40.0000
jpowers-varprowlSNP**homalt
99.8292
99.9606
99.6981
20.3193
1179696465117982235732211
61.8808
ghariani-varprowlSNP**homalt
99.7891
99.9588
99.6200
19.7823
1179670486117979245002208
49.0667
astatham-gatkSNP**homalt
99.9742
99.9548
99.9936
17.1971
117962753411796037667
88.1579
ckim-dragenSNP**homalt
99.9725
99.9534
99.9917
17.1093
117961155011798219880
81.6327
ltrigg-rtg2SNP**homalt
99.9694
99.9515
99.9872
17.0159
11795855721179505151139
92.0530