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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 293 294 295 296 297 298 299 300 301 ... 1720 1721 » 14801-14850 / 86044 show all
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.4505	99.3666	99.5347	87.4509	2353	15	2353	11	10	90.9091
hfeng-pmm1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.1785	92.6743	99.9582	35.8734	2353	186	2389	1	1	100.0000
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.4293	99.3243	99.5345	87.4555	2352	16	2352	11	10	90.9091
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.4949	86.3386	99.5964	37.6133	2351	372	2468	10	10	100.0000
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	94.8741	95.6080	94.1515	50.7143	2351	108	9160	569	536	94.2004
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.1148	92.5561	99.9581	35.3992	2350	189	2386	1	1	100.0000
gduggal-bwavard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	58.4346	41.3660	99.4845	45.9233	2350	3331	2316	12	11	91.6667
hfeng-pmm1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.5950	86.3019	99.8782	37.9441	2350	373	2460	3	3	100.0000
gduggal-snapplat	SNP	tv	map_l250_m2_e1	*	86.4238	80.5556	93.2143	94.3146	2349	567	2349	171	71	41.5205
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	0.0000	86.2651	0.0000	0.0000	2349	374	0	0	0
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.3235	99.1976	99.4496	87.1665	2349	19	2349	13	13	100.0000
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	*	98.3471	97.3466	99.3684	59.4294	2348	64	2360	15	9	60.0000
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.3862	99.1554	99.6182	87.6455	2348	20	2348	9	8	88.8889
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.0510	92.4380	99.9581	32.0604	2347	192	2383	1	1	100.0000
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.1341	99.1132	99.1550	87.2227	2347	21	2347	20	8	40.0000
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.8835	99.1132	98.6549	87.3860	2347	21	2347	32	17	53.1250
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	79.5052	66.5627	98.6958	53.7549	2347	1179	2346	31	28	90.3226
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	79.5052	66.5627	98.6958	53.7549	2347	1179	2346	31	28	90.3226
eyeh-varpipe	INDEL	I6_15	*	hetalt	42.6506	27.4354	95.7540	48.5714	2346	6205	2413	107	106	99.0654
ckim-isaac	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	96.5210	93.9856	99.1970	53.9957	2344	150	2347	19	2	10.5263
asubramanian-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	91.8050	86.0815	98.3438	38.2217	2344	379	2494	42	35	83.3333
anovak-vg	INDEL	D6_15	HG002complexvar	het	77.7392	75.0641	80.6119	50.1246	2342	778	2582	621	443	71.3366
mlin-fermikit	INDEL	*	map_l100_m1_e0	*	74.7799	65.3095	87.4627	78.8610	2342	1244	2344	336	264	78.5714
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	96.1666	95.2420	97.1093	71.1366	2342	117	2318	69	36	52.1739
ciseli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	50.1218	86.1980	35.3337	81.4035	2342	375	2414	4418	249	5.6360
ckim-gatk	SNP	tv	map_l150_m0_e0	*	71.0339	56.1092	96.7755	93.2891	2342	1832	2341	78	7	8.9744
eyeh-varpipe	INDEL	I6_15	HG002compoundhet	hetalt	42.7960	27.4218	97.4089	29.0841	2341	6196	2406	64	63	98.4375
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.2779	98.6498	99.9141	39.6579	2338	32	2326	2	2	100.0000
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.1434	98.6909	99.6000	82.9235	2337	31	2241	9	0	0.0000
mlin-fermikit	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	64.3730	59.4553	70.1776	54.1149	2336	1593	2332	991	976	98.4864
ltrigg-rtg1	INDEL	I16_PLUS	*	het	92.1773	85.9088	99.4326	48.0027	2335	383	2278	13	5	38.4615
asubramanian-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.2667	91.9260	98.8593	33.2487	2334	205	2860	33	31	93.9394
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.0778	85.6776	99.5114	35.1466	2333	390	2444	12	12	100.0000
dgrover-gatk	INDEL	I6_15	HG002complexvar	het	99.4230	99.0658	99.7827	59.6952	2333	22	2296	5	4	80.0000
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.2342	85.6776	99.8774	37.7987	2333	390	2444	3	3	100.0000
gduggal-snapfb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	81.8508	71.2279	96.1979	32.2123	2332	942	6806	269	258	95.9108
gduggal-snapplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	59.2422	42.8650	95.8708	51.4971	2331	3107	2345	101	90	89.1089
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.1071	98.3544	99.8715	46.8458	2331	39	2331	3	3	100.0000
ckim-gatk	INDEL	I6_15	HG002complexvar	het	99.3586	98.9384	99.7824	59.6346	2330	25	2293	5	4	80.0000
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.1277	98.3122	99.9569	36.7876	2330	40	2317	1	1	100.0000
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	68.3237	77.6667	60.9872	71.9758	2330	670	3583	2292	1410	61.5183
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	91.8091	85.5307	99.0822	46.3398	2329	394	2375	22	22	100.0000
jmaeng-gatk	SNP	tv	map_l100_m0_e0	homalt	75.4210	60.5564	99.9571	72.3081	2329	1517	2329	1	1	100.0000
bgallagher-sentieon	INDEL	I6_15	HG002complexvar	het	99.2727	98.8535	99.6955	59.4318	2328	27	2292	7	6	85.7143
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	65.3933	98.2278	49.0105	39.1883	2328	42	2328	2422	2406	99.3394
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.9507	98.3108	99.5989	82.2763	2328	40	2235	9	0	0.0000
gduggal-snapfb	INDEL	*	segdup	*	93.0343	91.0407	95.1171	94.2770	2327	229	2396	123	43	34.9593
ckim-vqsr	INDEL	I6_15	HG002complexvar	het	99.2942	98.8110	99.7821	59.6661	2327	28	2290	5	4	80.0000
astatham-gatk	INDEL	I6_15	HG002complexvar	het	99.2512	98.7261	99.7819	59.6303	2325	30	2288	5	4	80.0000
anovak-vg	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	78.5739	85.5355	72.6602	82.1649	2324	393	2756	1037	513	49.4696

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