PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
13101-13150 / 86044 show all
ltrigg-rtg2SNPtvsegduphomalt
99.6765
99.9382
99.4161
89.5171
3236232351919
100.0000
dgrover-gatkSNPtvsegduphomalt
99.8765
99.9382
99.8149
89.5365
32362323666
100.0000
raldana-dualsentieonSNPtimap_l250_m2_e1het
97.5433
98.0903
97.0024
89.5913
32366332361002
2.0000
raldana-dualsentieonSNPtvsegduphomalt
99.8765
99.9382
99.8149
89.2756
32362323666
100.0000
ltrigg-rtg1SNPtvsegduphomalt
99.6765
99.9382
99.4161
89.9204
3236232351919
100.0000
jpowers-varprowlSNPtvsegduphomalt
99.1421
99.9074
98.3886
91.4237
3235332365329
54.7170
jli-customSNPtvsegduphomalt
99.8611
99.9074
99.8149
89.3818
32353323566
100.0000
bgallagher-sentieonSNPtvsegduphomalt
99.8611
99.9074
99.8149
89.4615
32353323566
100.0000
cchapple-customSNPtvsegduphomalt
99.8144
99.9074
99.7215
89.1707
32353322399
100.0000
jlack-gatkSNPtvsegduphomalt
99.8611
99.9074
99.8149
89.7982
32353323566
100.0000
hfeng-pmm2SNPtvsegduphomalt
99.8919
99.9074
99.8765
90.2428
32353323544
100.0000
ndellapenna-hhgaSNPtvsegduphomalt
99.6917
99.8765
99.5077
90.2309
3234432341616
100.0000
eyeh-varpipeSNPtvsegduphomalt
99.8439
99.8765
99.8114
90.5570
32344317666
100.0000
egarrison-hhgaSNPtvsegduphomalt
99.7379
99.8765
99.5996
90.3915
3234432341313
100.0000
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
95.9795
98.7477
93.3623
66.3775
3233413221229194
84.7162
ghariani-varprowlSNPtvsegduphomalt
99.0657
99.8456
98.2979
91.0501
3233532345629
51.7857
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.2002
98.7477
99.6569
58.1790
3233413195117
63.6364
rpoplin-dv42SNPtvsegduphomalt
99.7378
99.8456
99.6302
90.4939
3233532331212
100.0000
rpoplin-dv42SNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.5532
99.4766
99.6299
68.0748
3231173230125
41.6667
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.6237
98.6866
98.5609
63.0877
32314332194744
93.6170
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.7550
98.6561
96.8703
68.6124
323044321910499
95.1923
eyeh-varpipeSNPtimap_l250_m2_e0het
98.6087
99.2624
97.9636
91.2085
3230243175664
6.0606
anovak-vgSNPtvmap_l150_m2_e1homalt
87.3530
78.1084
99.0798
73.8866
322990532303023
76.6667
jli-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.3229
99.3534
99.2923
66.7825
3227213227236
26.0870
gduggal-snapfbSNPtvsegduphomalt
99.3840
99.6603
99.1093
91.8109
3227113227298
27.5862
ghariani-varprowlSNPtimap_l250_m2_e1het
95.1903
97.7872
92.7278
92.3245
322673322625351
20.1581
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
85.7504
85.7485
85.7523
74.5958
32255363220535212
39.6262
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
85.7504
85.7485
85.7523
74.5958
32255363220535212
39.6262
cchapple-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.3846
99.2919
99.4776
66.9410
3225233237173
17.6471
gduggal-bwavardSNPtimap_l250_m2_e1het
88.2543
97.7266
80.4560
93.2754
322475321178022
2.8205
gduggal-bwafbSNPtvsegduphomalt
99.6445
99.5368
99.7524
90.8111
322315322388
100.0000
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
62.0536
50.9807
79.2711
51.4534
322330992436637614
96.3893
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
62.0536
50.9807
79.2711
51.4534
322330992436637614
96.3893
gduggal-snapvardSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
95.5819
93.2562
98.0265
65.1478
322223331796422
34.3750
anovak-vgINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
69.4306
91.0941
56.0913
63.9073
3222315525841163904
94.8494
bgallagher-sentieonSNPtimap_l250_m2_e0het
98.3066
99.0166
97.6068
90.7462
32223232227916
20.2532
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.4655
91.3500
99.9693
40.4962
3221305326111
100.0000
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.4655
91.3500
99.9693
40.4962
3221305326111
100.0000
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
90.0576
82.2478
99.5062
84.1820
322069532241614
87.5000
hfeng-pmm3SNPtimap_l250_m2_e0het
98.9700
98.9244
99.0157
89.3221
3219353219323
9.3750
hfeng-pmm2SNPtimap_l250_m2_e0het
98.4404
98.9244
97.9610
90.8174
3219353219677
10.4478
bgallagher-sentieonSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.2753
99.1071
99.4439
65.2571
3219293219184
22.2222
ciseli-customINDEL*lowcmp_SimpleRepeat_triTR_11to50het
84.3637
87.9716
81.0401
48.2088
32184403257762318
41.7323
ckim-gatkSNPtimap_l150_m0_e0het
76.3401
63.1156
96.5755
93.3356
32171880321511418
15.7895
jpowers-varprowlINDEL*map_l100_m1_e0*
91.2993
89.7100
92.9459
84.6574
32173693215244196
80.3279
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.2891
92.0962
98.7113
50.7555
321627632174236
85.7143
jlack-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.0453
99.0148
99.0758
65.2537
3216323216307
23.3333
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
36.9719
33.9924
40.5239
46.0310
32156243321847234680
99.0896
jmaeng-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.3050
98.9840
99.6281
65.8771
3215333215122
16.6667
ckim-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.1672
98.9840
99.3511
65.9333
3215333215218
38.0952