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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 22 23 24 25 26 27 28 29 30 ... 1720 1721 » 1251-1300 / 86044 show all
gduggal-snapfb	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	88.4732	99.0329	79.9484	69.7226	55093	538	55477	13914	538	3.8666
hfeng-pmm3	SNP	*	map_siren	homalt	99.9057	99.8840	99.9274	53.2388	55092	64	55083	40	22	55.0000
hfeng-pmm1	SNP	*	map_siren	homalt	99.8994	99.8803	99.9184	53.4037	55090	66	55084	45	26	57.7778
eyeh-varpipe	SNP	*	map_siren	homalt	99.8931	99.8749	99.9112	54.6593	55087	69	52905	47	25	53.1915
ndellapenna-hhga	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3149	99.0149	99.6167	57.6636	55083	548	55098	212	134	63.2075
astatham-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4718	99.0131	99.9347	60.3688	55082	549	55072	36	19	52.7778
ghariani-varprowl	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	95.4136	99.0024	92.0759	67.6063	55076	555	55287	4758	565	11.8747
hfeng-pmm3	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4564	98.9898	99.9274	58.6346	55069	562	55060	40	15	37.5000
raldana-dualsentieon	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3531	98.9700	99.7391	58.7473	55058	573	55048	144	22	15.2778
raldana-dualsentieon	SNP	*	map_siren	homalt	99.8920	99.8187	99.9655	49.6673	55056	100	55047	19	19	100.0000
hfeng-pmm1	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4409	98.9502	99.9364	58.3709	55047	584	55037	35	12	34.2857
ltrigg-rtg1	SNP	*	map_siren	homalt	99.8648	99.7933	99.9364	52.2080	55042	114	55031	35	31	88.5714
asubramanian-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.6773	98.9323	98.4237	61.2579	55037	594	55072	882	34	3.8549
egarrison-hhga	SNP	*	map_siren	homalt	99.8639	99.7770	99.9510	53.4112	55033	123	55033	27	24	88.8889
bgallagher-sentieon	SNP	*	map_siren	homalt	99.8557	99.7643	99.9473	50.0857	55026	130	55017	29	25	86.2069
ltrigg-rtg2	SNP	*	map_siren	homalt	99.8557	99.7571	99.9546	50.5157	55022	134	55010	25	22	88.0000
jli-custom	SNP	*	map_siren	homalt	99.8512	99.7462	99.9564	49.8643	55016	140	55010	24	24	100.0000
hfeng-pmm2	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3785	98.8765	99.8856	58.5898	55006	625	54996	63	10	15.8730
ndellapenna-hhga	SNP	*	map_siren	homalt	99.8258	99.7135	99.9382	52.6378	54998	158	54999	34	30	88.2353
rpoplin-dv42	SNP	*	map_siren	homalt	99.7831	99.6882	99.8783	53.6066	54984	172	54983	67	63	94.0299
dgrover-gatk	SNP	*	map_siren	homalt	99.8121	99.6791	99.9455	50.4067	54979	177	54970	30	26	86.6667
jpowers-varprowl	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.8391	98.7777	96.9182	66.3842	54951	680	55130	1753	575	32.8009
astatham-gatk	SNP	*	map_siren	homalt	99.7411	99.5377	99.9454	50.1425	54901	255	54892	30	26	86.6667
ckim-dragen	SNP	*	map_siren	homalt	99.7220	99.5214	99.9236	48.9049	54892	264	54896	42	38	90.4762
gduggal-bwafb	SNP	*	map_siren	homalt	99.7102	99.5014	99.9199	54.2074	54881	275	54881	44	25	56.8182
gduggal-bwavard	INDEL	I1_5	*	homalt	95.1435	90.7626	99.9687	33.2973	54846	5582	54343	17	11	64.7059
jpowers-varprowl	SNP	*	map_siren	homalt	99.5443	99.4144	99.6746	55.8957	54833	323	54834	179	129	72.0670
ghariani-varprowl	SNP	*	map_siren	homalt	99.5027	99.3944	99.6112	54.3239	54822	334	54823	214	127	59.3458
gduggal-snapplat	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	67.1528	57.9879	79.7584	80.2389	54769	39680	61674	15652	4576	29.2359
jlack-gatk	SNP	*	map_siren	homalt	99.6008	99.2857	99.9179	50.5286	54762	394	54753	45	30	66.6667
anovak-vg	INDEL	*	HG002complexvar	*	72.8155	71.0364	74.6860	53.4026	54654	22284	56069	19004	16560	87.1395
gduggal-bwaplat	SNP	ti	map_siren	het	92.8447	87.2527	99.2026	72.7353	54430	7952	54492	438	111	25.3425
mlin-fermikit	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.9901	97.8124	98.1685	60.1939	54414	1217	54457	1016	736	72.4409
gduggal-snapfb	SNP	*	map_siren	homalt	99.0661	98.3701	99.7720	60.7462	54257	899	54257	124	41	33.0645
gduggal-bwavard	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.5998	97.4834	97.7164	62.9555	54231	1400	53617	1253	392	31.2849
cchapple-custom	SNP	*	map_siren	homalt	99.1241	98.2758	99.9871	48.6990	54205	951	54173	7	7	100.0000
ciseli-custom	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	88.8947	97.3720	81.7754	63.9228	54169	1462	54352	12113	797	6.5797
qzeng-custom	SNP	ti	map_siren	het	92.2591	86.5538	98.7696	67.2335	53994	8388	53703	669	449	67.1151
gduggal-snapvard	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	93.3922	97.0358	90.0123	67.8126	53982	1649	53380	5923	338	5.7066
anovak-vg	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	96.1202	97.0035	95.2529	60.1354	53964	1667	55240	2753	1338	48.6015
ciseli-custom	INDEL	I1_5	*	homalt	89.1001	89.2384	88.9622	46.9528	53925	6503	53678	6660	6265	94.0691
ciseli-custom	SNP	ti	map_siren	het	88.8574	85.8902	92.0370	60.6835	53580	8802	53468	4626	118	2.5508
gduggal-snapvard	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	80.4680	83.0514	78.0406	69.2847	53510	10920	63120	17761	15073	84.8657
gduggal-bwavard	SNP	*	map_siren	homalt	98.4056	96.9468	99.9088	52.1457	53472	1684	52608	48	40	83.3333
gduggal-bwaplat	SNP	*	map_l100_m2_e1	*	82.9577	71.1789	99.4078	82.2985	53197	21540	53209	317	87	27.4448
gduggal-snapvard	SNP	*	map_siren	homalt	98.0593	96.3449	99.8358	52.8740	53140	2016	52295	86	67	77.9070
gduggal-bwaplat	SNP	*	map_l100_m2_e0	*	82.8217	70.9791	99.4075	82.3292	52499	21465	52511	313	86	27.4760
ckim-isaac	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	96.5147	94.2784	98.8597	54.0704	52448	3183	52797	609	355	58.2923
gduggal-snapplat	SNP	*	map_siren	homalt	97.4154	95.0214	99.9332	54.3867	52410	2746	52361	35	23	65.7143
ckim-vqsr	SNP	ti	map_siren	het	91.0834	83.9713	99.5117	71.3937	52383	9999	52376	257	20	7.7821

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