PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12551-12600 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.2324 | 94.6386 | 99.9724 | 29.4827 | 3601 | 204 | 3625 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m2_e0 | * | 97.9477 | 97.5088 | 98.3906 | 98.2302 | 3601 | 92 | 3607 | 59 | 27 | 45.7627 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 89.5432 | 89.7781 | 89.3096 | 71.8319 | 3601 | 410 | 3609 | 432 | 17 | 3.9352 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | * | 98.1873 | 97.4817 | 98.9032 | 83.5913 | 3600 | 93 | 3607 | 40 | 9 | 22.5000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5713 | 99.3652 | 99.7783 | 74.4113 | 3600 | 23 | 3600 | 8 | 6 | 75.0000 | |
| ckim-vqsr | SNP | tv | map_l100_m2_e1 | homalt | 55.8010 | 38.7014 | 99.9722 | 81.3226 | 3600 | 5702 | 3600 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.2061 | 98.4144 | 92.2003 | 46.1270 | 3600 | 58 | 3700 | 313 | 294 | 93.9297 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 82.1636 | 88.4927 | 76.6793 | 63.1888 | 3599 | 468 | 3847 | 1170 | 372 | 31.7949 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4660 | 99.3376 | 99.5947 | 73.4410 | 3599 | 24 | 3686 | 15 | 12 | 80.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7828 | 98.3598 | 99.2095 | 53.1018 | 3598 | 60 | 3765 | 30 | 4 | 13.3333 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4481 | 90.3112 | 98.9821 | 58.9266 | 3598 | 386 | 3598 | 37 | 30 | 81.0811 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5711 | 99.3100 | 99.8335 | 74.5893 | 3598 | 25 | 3598 | 6 | 2 | 33.3333 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.4252 | 92.3274 | 98.7380 | 54.1740 | 3598 | 299 | 3599 | 46 | 39 | 84.7826 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 79.1231 | 74.0733 | 84.9119 | 84.9242 | 3597 | 1259 | 3613 | 642 | 94 | 14.6417 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.1899 | 94.5335 | 100.0000 | 30.3194 | 3597 | 208 | 3622 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l100_m2_e0 | * | 97.9722 | 97.4005 | 98.5507 | 83.3204 | 3597 | 96 | 3604 | 53 | 13 | 24.5283 | |
| ckim-dragen | INDEL | * | map_l100_m2_e0 | * | 96.9907 | 97.3734 | 96.6111 | 87.1158 | 3596 | 97 | 3592 | 126 | 19 | 15.0794 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3113 | 99.2548 | 99.3680 | 72.5172 | 3596 | 27 | 3616 | 23 | 5 | 21.7391 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.3225 | 98.7905 | 99.8601 | 50.4916 | 3594 | 44 | 3570 | 5 | 3 | 60.0000 | |
| ckim-isaac | INDEL | * | map_siren | het | 87.7323 | 79.7249 | 97.5278 | 80.3155 | 3594 | 914 | 3590 | 91 | 35 | 38.4615 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 80.2083 | 71.8944 | 90.6965 | 69.6512 | 3594 | 1405 | 3646 | 374 | 325 | 86.8984 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 80.2083 | 71.8944 | 90.6965 | 69.6512 | 3594 | 1405 | 3646 | 374 | 325 | 86.8984 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 90.2910 | 84.7806 | 96.5674 | 90.4279 | 3593 | 645 | 3601 | 128 | 18 | 14.0625 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.5449 | 91.7497 | 99.6677 | 68.0131 | 3592 | 323 | 3599 | 12 | 9 | 75.0000 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e0 | * | 97.4507 | 97.2380 | 97.6643 | 97.6120 | 3591 | 102 | 3596 | 86 | 39 | 45.3488 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.2126 | 99.1168 | 99.3086 | 83.9167 | 3591 | 32 | 3591 | 25 | 21 | 84.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.0656 | 94.3233 | 99.9723 | 28.7295 | 3589 | 216 | 3606 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.9135 | 97.8996 | 97.9275 | 49.2246 | 3589 | 77 | 3591 | 76 | 67 | 88.1579 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 83.0702 | 98.1137 | 72.0266 | 52.1291 | 3589 | 69 | 3579 | 1390 | 1276 | 91.7986 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.8190 | 98.1137 | 70.1659 | 50.3295 | 3589 | 69 | 3596 | 1529 | 1471 | 96.2067 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.3000 | 98.0590 | 92.6920 | 44.9432 | 3587 | 71 | 3729 | 294 | 269 | 91.4966 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e1 | * | 97.3272 | 95.5005 | 99.2250 | 80.3823 | 3587 | 169 | 3585 | 28 | 7 | 25.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | * | * | 58.4101 | 56.2490 | 60.7439 | 65.3100 | 3587 | 2790 | 3593 | 2322 | 1708 | 73.5573 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.9102 | 91.2700 | 94.6103 | 54.6326 | 3586 | 343 | 3581 | 204 | 197 | 96.5686 | |
| jmaeng-gatk | SNP | * | map_l125_m0_e0 | homalt | 69.6311 | 53.4267 | 99.9443 | 78.9757 | 3586 | 3126 | 3586 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.1559 | 98.4882 | 99.8328 | 57.1769 | 3583 | 55 | 3583 | 6 | 4 | 66.6667 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.1689 | 98.4332 | 99.9157 | 48.1800 | 3581 | 57 | 3556 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | D16_PLUS | * | * | 59.6718 | 52.7860 | 68.6237 | 57.6195 | 3581 | 3203 | 3565 | 1630 | 1503 | 92.2086 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | * | 97.3112 | 96.9402 | 97.6852 | 97.7103 | 3580 | 113 | 3587 | 85 | 38 | 44.7059 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.9533 | 94.0867 | 100.0000 | 30.1357 | 3580 | 225 | 3605 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.2110 | 98.7855 | 99.6402 | 72.5769 | 3579 | 44 | 3600 | 13 | 3 | 23.0769 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.9775 | 98.7855 | 99.1701 | 81.3679 | 3579 | 44 | 3585 | 30 | 6 | 20.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.5808 | 93.9028 | 99.4161 | 29.0155 | 3573 | 232 | 4086 | 24 | 23 | 95.8333 | |
| ckim-gatk | SNP | * | map_l125_m0_e0 | homalt | 69.4469 | 53.2181 | 99.9161 | 80.0469 | 3572 | 3140 | 3572 | 3 | 1 | 33.3333 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 86.1010 | 77.3614 | 97.0668 | 59.1479 | 3571 | 1045 | 3574 | 108 | 9 | 8.3333 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.5017 | 90.8883 | 94.1735 | 55.0486 | 3571 | 358 | 3572 | 221 | 201 | 90.9502 | |
| astatham-gatk | INDEL | * | map_l100_m2_e1 | * | 96.5544 | 95.0745 | 98.0811 | 86.7793 | 3571 | 185 | 3578 | 70 | 18 | 25.7143 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.1203 | 98.5371 | 97.7070 | 73.4654 | 3570 | 53 | 3835 | 90 | 21 | 23.3333 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 93.5793 | 94.7690 | 92.4191 | 52.4483 | 3569 | 197 | 3572 | 293 | 241 | 82.2526 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 93.5793 | 94.7690 | 92.4191 | 52.4483 | 3569 | 197 | 3572 | 293 | 241 | 82.2526 | |