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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
12501-12550 / 86044 show all
jli-customINDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.4647
99.0705
99.8621
50.6131
362434362051
20.0000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
98.9354
98.2913
99.5879
51.8136
36246336251511
73.3333
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
98.8001
98.8271
98.7732
47.1774
36234336234533
73.3333
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
97.0658
96.3042
97.8396
70.2140
362213936238065
81.2500
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.0658
96.3042
97.8396
70.2140
362213936238065
81.2500
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
94.8288
92.9433
96.7925
52.5751
36222754617153140
91.5033
jli-customINDEL*map_l100_m2_e0*
98.4246
98.0774
98.7742
83.9477
36227136264515
33.3333
jlack-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.1705
99.5602
96.8190
57.4112
3622163622119117
98.3193
cchapple-customINDEL*map_l100_m2_e1*
95.9700
96.4324
95.5120
84.7746
3622134370317452
29.8851
qzeng-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
98.9409
98.7725
99.1098
44.1885
36214536743332
96.9697
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
98.9195
98.2099
99.6395
45.6518
3621663593137
53.8462
ltrigg-rtg2INDEL*map_l100_m2_e1*
97.6390
96.3525
98.9603
79.8456
36191373617386
15.7895
jmaeng-gatkINDEL*map_l100_m2_e0*
96.9371
97.9962
95.9006
89.1934
361974362615521
13.5484
cchapple-customINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.0259
90.8384
97.4454
47.9934
361936537009776
78.3505
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
98.9744
98.1557
99.8069
48.5309
361968361974
57.1429
jlack-gatkINDEL*map_l100_m2_e0*
95.3427
97.9691
92.8535
88.3944
361875362527928
10.0358
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8068
99.8344
99.7793
75.9360
36176361783
37.5000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
98.7204
98.1014
99.3473
45.8867
36177036532422
91.6667
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7380
99.8068
99.6692
75.6445
361673616126
50.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7930
99.8068
99.7792
75.7754
36167361683
37.5000
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6964
99.7792
99.6138
75.7541
361583611146
42.8571
hfeng-pmm2INDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.4117
94.9540
100.0000
30.3657
3613192363700
hfeng-pmm3INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
98.9050
97.9929
99.8342
48.4986
361374361363
50.0000
jpowers-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
38.7027
35.8682
42.0236
64.3849
36136460360149684896
98.5507
ndellapenna-hhgaINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.1506
94.9540
99.4513
30.8218
361319236252019
95.0000
ckim-vqsrSNPtimap_l125_m2_e0homalt
48.2602
31.8102
99.9447
86.1579
36137745361322
100.0000
egarrison-hhgaINDEL*HG002compoundhethet
60.4981
88.2511
46.0244
58.9093
3613481470655195300
96.0319
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.2444
98.7425
99.7514
50.7816
361246361293
33.3333
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.2169
98.7151
99.7238
50.1102
3611473611104
40.0000
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.2442
98.7151
99.7789
49.7012
361147361184
50.0000
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.2169
98.7151
99.7238
50.4244
3611473611103
30.0000
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7375
99.6412
99.8341
75.9622
361013361063
50.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7100
99.6412
99.7789
75.9521
361013361083
37.5000
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
98.7958
97.9116
99.6962
48.3747
3610773610119
81.8182
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.3923
99.2303
97.5682
62.2540
36102836119084
93.3333
raldana-dualsentieonINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.8618
90.5873
97.3819
58.7738
360937536089792
94.8454
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
98.8226
97.8845
99.7788
48.7459
360978360986
75.0000
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5173
99.5860
99.4487
75.8037
3608153608209
45.0000
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6822
99.5584
99.8063
74.0988
360716360773
42.8571
ckim-dragenINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.0329
91.8045
94.2947
54.2066
36073223603218214
98.1651
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7097
99.5308
99.8892
74.1552
360617360641
25.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6683
99.5308
99.8063
75.9886
360617360675
71.4286
ltrigg-rtg1INDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.1956
90.5120
98.1916
59.9330
360637836386732
47.7612
bgallagher-sentieonINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.9104
91.7791
94.0700
54.4828
36063233601227215
94.7137
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6820
99.5032
99.8615
74.2124
360518360551
20.0000
jli-customINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.2879
94.7438
99.9725
25.8927
3605200363111
100.0000
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.1048
98.5238
99.6927
45.3838
3604543568112
18.1818
eyeh-varpipeINDELD16_PLUS**
59.3408
53.1250
67.2039
51.2916
36043180358617501709
97.6571
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
92.1748
98.3088
86.7613
48.1654
3604624155634622
98.1073
qzeng-customINDEL*lowcmp_SimpleRepeat_triTR_11to50het
97.5207
98.4691
96.5904
42.5528
360256679924041
17.0833