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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
12351-12400 / 86044 show all
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.9129
98.0590
99.7817
66.6211
368873365785
62.5000
ndellapenna-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
80.5286
73.7548
88.6726
69.8081
368713123781483366
75.7764
ndellapenna-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
80.5286
73.7548
88.6726
69.8081
368713123781483366
75.7764
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.6703
94.6112
98.8210
55.5926
368721036884437
84.0909
bgallagher-sentieonINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.4170
92.5452
96.3660
61.9062
36872973686139128
92.0863
ndellapenna-hhgaINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
81.6855
91.2376
73.9439
67.5049
3686354406114311308
91.4046
egarrison-hhgaINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
80.6539
91.2376
72.2705
67.9116
3686354391215011377
91.7388
jli-customINDEL*map_l100_m2_e1*
98.4239
98.0564
98.7942
84.0281
36837336874515
33.3333
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
96.1312
95.1667
97.1154
62.9013
36821873636108104
96.2963
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.6996
97.7430
99.6751
54.6036
3681853681127
58.3333
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6996
97.7430
99.6751
54.6036
3681853681127
58.3333
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
84.8287
79.2124
91.3021
39.5276
3681966175316781
48.5030
jmaeng-gatkINDEL*map_l100_m2_e1*
96.9607
97.9766
95.9656
89.2269
368076368715521
13.5484
ckim-dragenINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.3918
92.3695
96.5046
61.7780
36803043672133128
96.2406
mlin-fermikitSNPtimap_l150_m1_e0homalt
60.2226
50.2115
75.2198
56.9340
36793648367912121145
94.4719
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
89.5573
95.0633
84.6541
45.2951
3678191105861919912
47.5248
bgallagher-sentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.4850
94.3803
98.6856
56.4231
367821936794942
85.7143
jlack-gatkINDEL*map_l100_m2_e1*
95.3410
97.9233
92.8914
88.4293
367878368528230
10.6383
gduggal-bwaplatINDELI16_PLUS**
72.4372
57.6760
97.3531
65.4535
36782699367810083
83.0000
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.6488
94.3546
99.0574
55.6339
367722036783528
80.0000
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.6703
97.6102
99.7536
44.9684
367690364497
77.7778
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6703
97.6102
99.7536
44.9684
367690364497
77.7778
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7497
97.7134
99.8083
64.4325
367586364474
57.1429
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7497
97.7134
99.8083
64.4325
367586364474
57.1429
qzeng-customINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
96.0217
94.2549
97.8560
49.0716
36752248535187123
65.7754
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
95.1163
94.9599
95.2731
65.4635
36741953628180177
98.3333
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
95.9582
94.9341
97.0045
63.7624
36731963627112107
95.5357
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
98.1325
96.5309
99.7881
46.4918
3673132376788
100.0000
ltrigg-rtg1INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
93.8332
90.8911
96.9721
73.4710
3672368365111438
33.3333
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
96.8442
97.6336
96.0674
58.0189
3672895814238216
90.7563
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
96.8442
97.6336
96.0674
58.0189
3672895814238216
90.7563
ckim-vqsrSNPtimap_l125_m2_e1homalt
48.4929
32.0126
99.9455
86.0864
36687790366822
100.0000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
92.0742
88.4708
95.9835
76.8106
3668478372815682
52.5641
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
95.9408
94.7790
97.1314
64.3062
36672023623107103
96.2617
jli-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
95.0957
93.3062
96.9553
51.5459
36662633662115107
93.0435
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.3724
94.0724
98.7877
56.0658
366623136674539
86.6667
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8638
100.0000
99.7280
50.5648
3666036661010
100.0000
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9319
100.0000
99.8638
51.2807
36660366655
100.0000
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8366
99.9727
99.7008
51.3048
3665136651111
100.0000
jli-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9319
99.9727
99.8911
50.1493
36651366844
100.0000
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8910
99.9727
99.8094
51.1312
36651366577
100.0000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9182
99.9727
99.8638
51.1578
36651366555
100.0000
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9318
99.9727
99.8910
51.2943
36651366544
100.0000
gduggal-snapfbSNPtvmap_l100_m0_e0homalt
97.1883
95.2678
99.1879
78.6252
36641823664306
20.0000
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9182
99.9454
99.8909
51.3011
36642366444
100.0000
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8365
99.9182
99.7549
50.2169
36633366399
100.0000
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8909
99.8909
99.8909
48.7917
36624366244
100.0000
rpoplin-dv42INDEL*map_l100_m2_e1*
97.9158
97.4973
98.3378
98.2252
36629436686229
46.7742
hfeng-pmm1INDEL*map_l100_m2_e1*
98.1906
97.4707
98.9213
83.6789
3661953668409
22.5000
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8228
99.8636
99.7820
48.9282
36615366188
100.0000