PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
12051-12100 / 86044 show all
ghariani-varprowlSNPtvmap_l150_m1_e0homalt
98.6612
98.0487
99.2815
73.6565
38697738692815
53.5714
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.6908
99.5369
99.8452
60.6918
386918386966
100.0000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6651
99.7679
99.5625
58.6903
386993869170
0.0000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.3011
99.7679
98.8387
65.0271
386993830453
6.6667
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5424
99.7679
99.3178
59.4259
386993931271
3.7037
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.4343
99.0271
99.8449
39.8008
386838386363
50.0000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.4469
99.5112
99.3827
62.5253
3868193864249
37.5000
gduggal-snapvardINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
56.7821
0.0000
0.0000
38682944000
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.3832
98.7739
100.0000
75.8608
386748388400
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
97.2808
99.7163
94.9614
65.1121
38671136941968
4.0816
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.6158
95.9792
99.3093
24.9856
386716238822726
96.2963
ckim-vqsrSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.4469
98.9759
99.9224
33.5509
386640386532
66.6667
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.7108
98.7484
98.6731
78.8824
38664938675245
86.5385
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7163
99.4597
99.9741
59.5798
386621386611
100.0000
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
95.7607
94.8001
96.7410
36.3288
38652123859130125
96.1538
mlin-fermikitSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
98.6109
99.4340
97.8014
61.3838
38652238708783
95.4023
jpowers-varprowlINDELD16_PLUS**
60.4248
56.9575
64.3415
68.1361
38642920387421472111
98.3232
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
98.8486
99.6390
98.0706
65.3592
38641438637610
13.1579
ckim-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.6646
99.3826
99.9483
59.5457
386324386322
100.0000
rpoplin-dv42INDEL*HG002compoundhethet
81.4607
94.3576
71.6654
76.0047
3863231380415041483
98.6037
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
90.6695
93.1741
88.2960
82.0927
38632834021533266
49.9062
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.8720
95.8799
99.9486
22.7273
3863166389122
100.0000
ciseli-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
97.5412
99.3311
95.8146
61.4853
386126384616874
44.0476
dgrover-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.1784
99.0254
99.3318
68.0069
38613838652615
57.6923
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7288
99.5616
99.8965
59.3927
386117386140
0.0000
jlack-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.1732
94.9348
95.4128
68.8499
38612063848185153
82.7027
jmaeng-gatkSNP*map_l250_m1_e0*
68.9230
53.4340
97.0573
96.2285
3859336338591179
7.6923
gduggal-bwavardSNPtvmap_l150_m1_e0homalt
98.7838
97.7952
99.7926
71.2507
385987384986
75.0000
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.9487
98.5441
99.3567
82.1497
38585738612516
64.0000
astatham-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.1904
98.9484
99.4336
67.7810
38584138622216
72.7273
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.0886
98.9484
99.2292
67.4228
38584138623018
60.0000
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.8850
98.5441
99.2284
79.4839
38585738583023
76.6667
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7285
99.4585
100.0000
57.4142
385721385700
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6255
99.4585
99.7930
57.9022
385721385780
0.0000
ckim-dragenINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.1772
98.9228
99.4328
67.8997
38574238572216
72.7273
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
96.0858
99.4585
92.9344
71.8889
385721386729419
6.4626
asubramanian-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.2920
98.7455
99.8446
31.3666
385749385661
16.6667
ciseli-customSNPtimap_l125_m0_e0homalt
86.4046
85.8606
86.9555
67.4980
38566353853578472
81.6609
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7155
99.4327
100.0000
57.3263
385622385600
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6125
99.4327
99.7930
57.8718
385622385683
37.5000
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
64.3918
47.8099
98.5834
40.4750
3853420634104942
85.7143
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
64.3918
47.8099
98.5834
40.4750
3853420634104942
85.7143
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.2698
98.4163
96.1497
78.7844
385362357114349
34.2657
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
82.8388
70.8349
99.7415
27.5927
3852158638581010
100.0000
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5220
99.3296
99.7152
58.2062
3852263852114
36.3636
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.2017
98.7689
99.6382
66.9061
3851483856148
57.1429
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
98.8496
98.7433
98.9562
63.8705
38504938874114
34.1463
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
87.9595
98.3397
79.5614
83.1943
3850653846988223
22.5709
ckim-isaacSNPtvmap_l150_m1_e0het
71.1670
55.3988
99.4831
79.3620
384830983849206
30.0000
hfeng-pmm2INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.1370
98.6663
99.6121
66.8126
38475238521510
66.6667