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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
12001-12050 / 86044 show all
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9614
99.9743
99.9486
59.3220
38861388622
100.0000
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9743
99.9743
99.9743
59.5146
38861388611
100.0000
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.3479
98.8298
99.8715
53.0817
388546388550
0.0000
gduggal-bwaplatSNPtvmap_l150_m1_e0het
71.5733
55.9315
99.3606
92.7084
388530613885255
20.0000
cchapple-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9485
99.9228
99.9742
56.3906
38843387510
0.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3344
38843388422
100.0000
anovak-vgSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
97.7147
97.4166
98.0146
32.9344
388410339007974
93.6709
ghariani-varprowlSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
98.7801
99.9228
97.6633
61.6275
3884338879346
49.4624
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3897
38843388422
100.0000
jlack-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3004
38843388422
100.0000
jlack-gatkSNPtvmap_l150_m1_e0homalt
99.0943
98.4288
99.7688
70.0054
388462388496
66.6667
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9614
99.9228
100.0000
59.5375
38843388400
jpowers-varprowlSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.1961
99.9228
98.4799
61.8721
3884338876046
76.6667
jli-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9228
99.9228
99.9228
59.2856
38843388432
66.6667
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.4291
98.7026
98.1570
66.1366
3880513888731
1.3699
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9099
99.8199
100.0000
58.1282
38807387900
hfeng-pmm2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.6345
95.4020
97.8993
66.6779
388018738688365
78.3133
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
95.3412
95.1435
95.5397
38.5245
38791983877181170
93.9227
astatham-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8713
99.7942
99.9485
59.3783
38798387922
100.0000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8841
99.7685
100.0000
57.9364
38789387700
qzeng-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7805
99.7685
99.7926
58.3234
38789385087
87.5000
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.3796
95.3528
97.4288
66.7644
3878189386510294
92.1569
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8198
99.9742
99.6658
59.2542
387713877130
0.0000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
81.5998
93.5118
72.3797
87.9363
38772693805145265
4.4766
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8455
99.9742
99.7171
60.4476
387713877110
0.0000
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7927
99.7427
99.8427
56.7264
387710380963
50.0000
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4485
99.9742
98.9283
61.3587
387713877421
2.3810
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7941
99.9742
99.6146
59.9671
387713877150
0.0000
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.5123
99.0294
100.0000
77.4811
387738389600
jmaeng-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
94.8816
95.9653
93.8220
79.5053
38771633584236208
88.1356
jpowers-varprowlSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.2455
99.2320
99.2591
40.7060
38763038852910
34.4828
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.8328
99.0038
96.6891
76.0765
38763938841332
1.5038
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8583
99.9226
99.7940
60.8923
38753387580
0.0000
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8842
99.9226
99.8459
59.1543
38753388762
33.3333
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8325
99.9226
99.7426
60.4661
387533875100
0.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7811
99.6656
99.8969
59.9463
387413387444
100.0000
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5440
99.8969
99.1935
59.0506
387443936320
0.0000
gduggal-snapplatSNPtvHG002compoundhethet
71.6435
82.9018
63.0774
69.0248
387479939192294156
6.8004
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6375
99.8969
99.3795
60.3689
387443844242
8.3333
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7425
99.6656
99.8196
59.9732
387413387476
85.7143
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
87.0072
98.9272
77.6508
87.8604
3873423874111574
6.6368
jpowers-varprowlSNPtvmap_l150_m1_e0homalt
98.7251
98.1247
99.3330
75.8368
38727438722616
61.5385
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
95.1579
94.9718
95.3448
39.6821
38722053871189179
94.7090
qzeng-customINDEL*map_sirenhet
88.2436
85.8917
90.7279
86.0479
3872636432544293
21.0407
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.2827
98.9017
99.6667
74.9583
3872433887136
46.1538
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4605
99.8195
99.1042
60.8242
387173872350
0.0000
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
96.4762
96.4847
96.4677
49.2144
3870141396014574
51.0345
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8581
99.7937
99.9225
58.9725
38708387031
33.3333
astatham-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.5113
99.0527
99.9742
29.4879
386937386811
100.0000
ckim-gatkSNP*map_l250_m1_e0*
69.0461
53.5724
97.0891
96.1568
3869335338691169
7.7586