PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
11951-12000 / 86044 show all
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
91.9167
97.2077
87.1719
66.1173
3899112385356713
2.2928
jpowers-varprowlINDELD6_15*homalt
74.3238
61.6345
93.5925
52.0152
389924273900267242
90.6367
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7697
99.5913
99.9487
76.0057
389916389922
100.0000
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7569
99.5658
99.9487
80.8702
389817389820
0.0000
cchapple-customINDEL*HG002compoundhethet
96.8882
95.2125
98.6240
55.6229
389819650675707621
87.8359
astatham-gatkSNPtvmap_l150_m1_e0homalt
99.2995
98.7836
99.8207
68.8894
389848389875
71.4286
eyeh-varpipeSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.0758
99.7696
98.3916
38.1103
389793854636
9.5238
jlack-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.6292
99.7696
99.4893
34.4273
389793896203
15.0000
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7696
99.5402
100.0000
80.2993
389718389700
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.9504
99.5147
90.7864
82.3867
3896193902396320
80.8081
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7185
99.5147
99.9231
80.8305
389619389831
33.3333
rpoplin-dv42SNPtvmap_l150_m1_e0homalt
99.2485
98.7329
99.7695
71.6659
389650389699
100.0000
ckim-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7823
99.7440
99.8206
33.3561
389610389573
42.8571
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7439
99.7184
99.7695
31.0247
389511389593
33.3333
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.3593
99.4891
99.2298
79.0524
38952038653020
66.6667
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5146
99.0842
99.9487
54.1691
389536389520
0.0000
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7311
99.4891
99.9743
79.8583
389520389510
0.0000
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7697
99.7184
99.8211
26.0771
389511390571
14.2857
gduggal-bwavardSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
98.7824
97.6925
99.8969
31.5687
389592387444
100.0000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7441
99.6928
99.7955
25.9231
389412390481
12.5000
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
74.1073
99.0588
59.1965
64.7074
3894373949272232
1.1756
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
98.2352
96.6493
99.8739
41.6507
3894135396155
100.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8206
99.6928
99.9487
29.2204
389412389321
50.0000
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4763
99.0588
99.8974
52.8829
389437389440
0.0000
hfeng-pmm1SNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7949
99.6672
99.9230
28.5321
389313389231
33.3333
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6927
99.4381
99.9487
76.0337
389322389322
100.0000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7565
99.6672
99.8461
33.6736
389313389262
33.3333
ltrigg-rtg1INDEL*HG002compoundhethet
96.0922
95.0904
97.1154
68.4751
3893201393911762
52.9915
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.3619
99.0333
99.6927
53.9179
3893383893120
0.0000
hfeng-pmm2SNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7565
99.6416
99.8717
29.3435
389214389151
20.0000
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6416
99.4125
99.8717
75.1815
389223389255
100.0000
gduggal-bwafbINDELI6_15HG002complexvar*
87.6466
81.2187
95.1793
49.2161
38929004008203196
96.5517
gduggal-snapfbSNPtilowcmp_SimpleRepeat_triTR_11to50*
96.6308
99.6416
93.7966
43.2141
389214390125811
4.2636
gduggal-snapvardSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
98.5046
97.6173
99.4081
39.4232
3892953863239
39.1304
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7436
99.6160
99.8716
27.5888
389115389051
20.0000
gduggal-snapfbSNPtvmap_l150_m2_e0homalt
97.2621
95.2731
99.3359
82.3744
38901933889266
23.0769
ghariani-varprowlSNPtilowcmp_SimpleRepeat_triTR_11to50*
98.6463
99.5904
97.7199
44.7612
3890163900919
9.8901
hfeng-pmm1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.8111
95.6479
98.0030
65.9757
389017738777963
79.7468
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.8837
95.6479
98.1519
65.9512
389017738777364
87.6712
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7564
99.5904
99.9230
28.4060
389016389130
0.0000
cchapple-customSNP*map_l150_m0_e0homalt
97.4937
95.1333
99.9743
71.2925
3890199388811
100.0000
astatham-gatkSNP*map_l250_m1_e0het
89.4949
81.7876
98.8059
91.8773
388986638894712
25.5319
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.0428
95.6233
96.4659
70.2238
38891783876142124
87.3239
gduggal-bwafbSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.3744
99.5648
99.1847
37.2000
3889173893327
21.8750
egarrison-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.6923
99.5392
99.8459
28.7987
388818388861
16.6667
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6282
99.2848
99.9740
70.9201
388728383911
100.0000
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
59.8035
38870388700
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9871
100.0000
99.9743
59.4747
38870388711
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6156
99.2848
99.9486
75.9210
388728388722
100.0000
ckim-dragenSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9743
99.9743
99.9743
59.5233
38861388811
100.0000