PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11551-11600 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | * | HG002compoundhet | * | 14.0649 | 13.8284 | 14.3095 | 60.1145 | 4143 | 25817 | 4126 | 24708 | 24326 | 98.4539 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 81.9762 | 69.7710 | 99.3570 | 62.1268 | 4143 | 1795 | 4172 | 27 | 27 | 100.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 59.7519 | 97.7584 | 43.0248 | 79.6303 | 4143 | 95 | 4253 | 5632 | 101 | 1.7933 | |
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 42.4373 | 41.1000 | 43.8645 | 68.7909 | 4140 | 5933 | 4118 | 5270 | 4818 | 91.4231 | |
| bgallagher-sentieon | SNP | tv | map_l150_m0_e0 | * | 98.4884 | 99.1375 | 97.8477 | 81.2755 | 4138 | 36 | 4137 | 91 | 10 | 10.9890 | |
| hfeng-pmm3 | SNP | tv | map_l150_m0_e0 | * | 99.0651 | 99.0177 | 99.1125 | 80.0536 | 4133 | 41 | 4132 | 37 | 3 | 8.1081 | |
| hfeng-pmm2 | SNP | tv | map_l150_m0_e0 | * | 98.6509 | 98.9938 | 98.3103 | 81.9664 | 4132 | 42 | 4131 | 71 | 6 | 8.4507 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 83.2366 | 80.6994 | 85.9386 | 73.3453 | 4131 | 988 | 5091 | 833 | 775 | 93.0372 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.6260 | 99.6141 | 99.6379 | 82.9126 | 4130 | 16 | 4128 | 15 | 8 | 53.3333 | |
| ckim-gatk | SNP | ti | map_l150_m1_e0 | homalt | 72.0545 | 56.3396 | 99.9274 | 79.8232 | 4128 | 3199 | 4128 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 49.2492 | 43.6456 | 56.5037 | 39.7780 | 4128 | 5330 | 4231 | 3257 | 2430 | 74.6085 | |
| hfeng-pmm1 | SNP | tv | map_l150_m0_e0 | * | 99.0281 | 98.8740 | 99.1827 | 80.1043 | 4127 | 47 | 4126 | 34 | 6 | 17.6471 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.3377 | 99.4935 | 99.1825 | 82.1709 | 4125 | 21 | 4125 | 34 | 6 | 17.6471 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.4814 | 99.4694 | 99.4934 | 82.7155 | 4124 | 22 | 4124 | 21 | 7 | 33.3333 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.9456 | 97.3101 | 98.5895 | 80.0705 | 4124 | 114 | 4124 | 59 | 15 | 25.4237 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e1 | homalt | 99.8426 | 99.7339 | 99.9516 | 72.6103 | 4123 | 11 | 4127 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | map_l150_m2_e1 | homalt | 99.7219 | 99.7339 | 99.7098 | 73.9872 | 4123 | 11 | 4123 | 12 | 4 | 33.3333 | |
| hfeng-pmm2 | SNP | tv | map_l150_m2_e1 | homalt | 99.7219 | 99.7339 | 99.7098 | 74.0785 | 4123 | 11 | 4123 | 12 | 4 | 33.3333 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e1 | homalt | 99.7814 | 99.7339 | 99.8289 | 76.4129 | 4123 | 11 | 4083 | 7 | 3 | 42.8571 | |
| gduggal-bwavard | INDEL | D6_15 | * | homalt | 78.7719 | 65.1755 | 99.5366 | 41.1089 | 4123 | 2203 | 4081 | 19 | 14 | 73.6842 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 63.4692 | 61.7158 | 65.3251 | 67.3472 | 4122 | 2557 | 5746 | 3050 | 1349 | 44.2295 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.4691 | 99.4211 | 99.5171 | 82.2582 | 4122 | 24 | 4122 | 20 | 7 | 35.0000 | |
| dgrover-gatk | SNP | tv | map_l150_m0_e0 | * | 98.5887 | 98.7542 | 98.4237 | 82.7837 | 4122 | 52 | 4121 | 66 | 10 | 15.1515 | |
| anovak-vg | SNP | ti | map_l250_m2_e0 | * | 75.7617 | 82.2684 | 70.2088 | 91.5692 | 4120 | 888 | 4103 | 1741 | 394 | 22.6307 | |
| hfeng-pmm3 | SNP | tv | map_l150_m2_e1 | homalt | 99.6855 | 99.6613 | 99.7096 | 73.9141 | 4120 | 14 | 4120 | 12 | 4 | 33.3333 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.4448 | 99.3729 | 99.5169 | 82.8933 | 4120 | 26 | 4120 | 20 | 8 | 40.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | homalt | 99.7941 | 99.6372 | 99.9515 | 70.3259 | 4119 | 15 | 4123 | 2 | 1 | 50.0000 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e1 | homalt | 99.7698 | 99.6130 | 99.9272 | 73.5901 | 4118 | 16 | 4118 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 85.6376 | 97.1213 | 76.5824 | 85.4250 | 4116 | 122 | 4150 | 1269 | 11 | 0.8668 | |
| raldana-dualsentieon | SNP | tv | map_l150_m2_e1 | homalt | 99.7335 | 99.5646 | 99.9029 | 70.1838 | 4116 | 18 | 4116 | 4 | 2 | 50.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.4081 | 99.2523 | 99.5645 | 82.9173 | 4115 | 31 | 4115 | 18 | 8 | 44.4444 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.4442 | 99.2523 | 99.6368 | 83.0397 | 4115 | 31 | 4115 | 15 | 7 | 46.6667 | |
| ndellapenna-hhga | SNP | tv | map_l150_m2_e1 | homalt | 99.6971 | 99.5162 | 99.8786 | 72.6929 | 4114 | 20 | 4114 | 5 | 4 | 80.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.3735 | 99.2041 | 99.5436 | 81.7204 | 4113 | 33 | 4144 | 19 | 8 | 42.1053 | |
| mlin-fermikit | INDEL | I6_15 | HG002complexvar | * | 88.7918 | 85.8097 | 91.9886 | 56.6838 | 4112 | 680 | 4191 | 365 | 361 | 98.9041 | |
| ckim-isaac | SNP | tv | map_l150_m2_e1 | het | 71.6314 | 55.9608 | 99.4920 | 80.5897 | 4112 | 3236 | 4113 | 21 | 6 | 28.5714 | |
| jli-custom | SNP | tv | map_l150_m2_e1 | homalt | 99.6848 | 99.4678 | 99.9028 | 70.2106 | 4112 | 22 | 4112 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | map_l150_m2_e1 | homalt | 99.6486 | 99.4678 | 99.8301 | 71.0988 | 4112 | 22 | 4112 | 7 | 5 | 71.4286 | |
| ckim-dragen | SNP | tv | map_l150_m2_e1 | homalt | 99.5761 | 99.4436 | 99.7089 | 69.3912 | 4111 | 23 | 4111 | 12 | 10 | 83.3333 | |
| jmaeng-gatk | SNP | tv | map_l125_m0_e0 | * | 75.4933 | 61.9967 | 96.5015 | 90.4918 | 4111 | 2520 | 4110 | 149 | 7 | 4.6980 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.8694 | 99.1317 | 98.6084 | 82.6759 | 4110 | 36 | 4110 | 58 | 16 | 27.5862 | |
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | * | 98.6080 | 98.4427 | 98.7737 | 78.9854 | 4109 | 65 | 4108 | 51 | 2 | 3.9216 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 40.2265 | 37.0781 | 43.9591 | 50.2516 | 4109 | 6973 | 4086 | 5209 | 5192 | 99.6736 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.8792 | 96.9561 | 94.8260 | 86.0126 | 4109 | 129 | 4142 | 226 | 11 | 4.8673 | |
| gduggal-snapvard | INDEL | D6_15 | * | hetalt | 0.0000 | 50.2569 | 0.0000 | 0.0000 | 4108 | 4066 | 0 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.6268 | 98.9870 | 98.2693 | 80.7168 | 4104 | 42 | 4145 | 73 | 1 | 1.3699 | |
| egarrison-hhga | SNP | tv | map_l150_m0_e0 | * | 98.9629 | 98.2990 | 99.6357 | 78.3979 | 4103 | 71 | 4103 | 15 | 6 | 40.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.5943 | 98.9387 | 96.2859 | 86.8966 | 4102 | 44 | 4122 | 159 | 29 | 18.2390 | |
| gduggal-snapvard | INDEL | D6_15 | HG002compoundhet | hetalt | 0.0000 | 50.3006 | 0.0000 | 0.0000 | 4100 | 4051 | 0 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l150_m0_e0 | * | 97.7354 | 98.2271 | 97.2486 | 82.2976 | 4100 | 74 | 4100 | 116 | 14 | 12.0690 | |