PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11501-11550 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | tv | HG002compoundhet | het | 78.1241 | 90.1776 | 68.9129 | 69.5656 | 4214 | 459 | 4336 | 1956 | 10 | 0.5112 | |
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 84.5678 | 88.4131 | 81.0431 | 88.8392 | 4212 | 552 | 4211 | 985 | 36 | 3.6548 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.4334 | 99.3865 | 99.4804 | 79.7057 | 4212 | 26 | 4212 | 22 | 8 | 36.3636 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.5609 | 99.3157 | 97.8175 | 79.7318 | 4209 | 29 | 4213 | 94 | 1 | 1.0638 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.5298 | 97.9511 | 80.7619 | 65.1199 | 4207 | 88 | 4219 | 1005 | 39 | 3.8806 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.3974 | 99.2449 | 99.5503 | 79.5805 | 4206 | 32 | 4206 | 19 | 5 | 26.3158 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 56.5909 | 40.1432 | 95.8723 | 58.5392 | 4205 | 6270 | 6759 | 291 | 284 | 97.5945 | |
| jpowers-varprowl | SNP | tv | map_l125_m0_e0 | het | 94.8319 | 95.4783 | 94.1941 | 83.6101 | 4202 | 199 | 4202 | 259 | 65 | 25.0965 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.9145 | 97.8347 | 97.9944 | 55.0665 | 4202 | 93 | 4202 | 86 | 37 | 43.0233 | |
| gduggal-bwavard | INDEL | I6_15 | * | homalt | 80.3317 | 67.3345 | 99.5468 | 32.9387 | 4201 | 2038 | 4173 | 19 | 15 | 78.9474 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e0 | * | 88.7392 | 83.8658 | 94.2139 | 93.6830 | 4200 | 808 | 4201 | 258 | 136 | 52.7132 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 92.8637 | 87.9925 | 98.3058 | 30.4621 | 4199 | 573 | 4468 | 77 | 70 | 90.9091 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.2575 | 99.0562 | 99.4596 | 77.8403 | 4198 | 40 | 4233 | 23 | 9 | 39.1304 | |
| asubramanian-gatk | SNP | * | map_l125_m0_e0 | * | 35.5829 | 21.6508 | 99.8098 | 95.1193 | 4197 | 15188 | 4197 | 8 | 5 | 62.5000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 94.8351 | 90.2733 | 99.8824 | 28.4609 | 4195 | 452 | 4248 | 5 | 4 | 80.0000 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.0491 | 98.9618 | 99.1365 | 81.8417 | 4194 | 44 | 4248 | 37 | 15 | 40.5405 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 59.5098 | 45.1054 | 87.4307 | 85.0479 | 4193 | 5103 | 4257 | 612 | 532 | 86.9281 | |
| gduggal-snapfb | SNP | ti | map_l125_m0_e0 | homalt | 96.3354 | 93.3645 | 99.5017 | 80.4209 | 4193 | 298 | 4193 | 21 | 10 | 47.6190 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 83.4657 | 81.8519 | 85.1445 | 71.6183 | 4190 | 929 | 4184 | 730 | 709 | 97.1233 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1392 | 98.8202 | 97.4675 | 78.5775 | 4188 | 50 | 4195 | 109 | 1 | 0.9174 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.0782 | 98.7966 | 99.3614 | 79.3181 | 4187 | 51 | 4201 | 27 | 8 | 29.6296 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 44.8798 | 37.6755 | 55.4905 | 73.6943 | 4185 | 6923 | 5685 | 4560 | 444 | 9.7368 | |
| hfeng-pmm3 | SNP | tv | HG002compoundhet | het | 94.3711 | 89.5142 | 99.7852 | 53.0848 | 4183 | 490 | 4181 | 9 | 2 | 22.2222 | |
| astatham-gatk | SNP | ti | map_l150_m0_e0 | het | 89.8677 | 82.0483 | 99.3346 | 85.7819 | 4182 | 915 | 4180 | 28 | 9 | 32.1429 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | het | 97.3350 | 95.0239 | 99.7613 | 54.4961 | 4182 | 219 | 4180 | 10 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | HG002compoundhet | het | 92.4509 | 89.4714 | 95.6356 | 62.4569 | 4181 | 492 | 4273 | 195 | 18 | 9.2308 | |
| hfeng-pmm1 | SNP | tv | HG002compoundhet | het | 94.3861 | 89.4072 | 99.9521 | 52.4903 | 4178 | 495 | 4176 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.2853 | 97.2759 | 95.3147 | 68.9687 | 4178 | 117 | 4150 | 204 | 19 | 9.3137 | |
| anovak-vg | SNP | ti | map_l250_m2_e1 | * | 75.8245 | 82.3089 | 70.2872 | 91.6096 | 4178 | 898 | 4161 | 1759 | 398 | 22.6265 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 93.5418 | 98.5606 | 89.0094 | 85.1964 | 4177 | 61 | 4187 | 517 | 55 | 10.6383 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.0952 | 98.5606 | 95.6726 | 86.1499 | 4177 | 61 | 4267 | 193 | 28 | 14.5078 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 92.5121 | 98.4899 | 87.2184 | 86.1606 | 4174 | 64 | 3910 | 573 | 37 | 6.4572 | |
| raldana-dualsentieon | SNP | tv | HG002compoundhet | het | 94.2957 | 89.3216 | 99.8564 | 53.2191 | 4174 | 499 | 4172 | 6 | 3 | 50.0000 | |
| hfeng-pmm2 | SNP | tv | HG002compoundhet | het | 94.2146 | 89.2146 | 99.8084 | 51.8565 | 4169 | 504 | 4167 | 8 | 2 | 25.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 61.3581 | 44.8472 | 97.1096 | 76.3054 | 4169 | 5127 | 5006 | 149 | 142 | 95.3020 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.8856 | 96.9499 | 89.1483 | 74.7503 | 4164 | 131 | 4124 | 502 | 11 | 2.1912 | |
| gduggal-bwavard | INDEL | D16_PLUS | * | * | 63.4968 | 61.3502 | 65.7990 | 69.3353 | 4162 | 2622 | 4171 | 2168 | 1906 | 87.9151 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.0127 | 98.2067 | 99.8321 | 79.0112 | 4162 | 76 | 4162 | 7 | 4 | 57.1429 | |
| ckim-isaac | INDEL | D6_15 | HG002complexvar | * | 83.7635 | 78.4798 | 89.8099 | 48.6609 | 4161 | 1141 | 4063 | 461 | 184 | 39.9132 | |
| gduggal-snapfb | INDEL | * | map_siren | het | 93.3260 | 92.3026 | 94.3724 | 79.8904 | 4161 | 347 | 4293 | 256 | 57 | 22.2656 | |
| gduggal-bwaplat | SNP | tv | map_l150_m2_e0 | het | 72.7336 | 57.3635 | 99.3551 | 93.0443 | 4160 | 3092 | 4160 | 27 | 5 | 18.5185 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 89.4763 | 93.5448 | 85.7470 | 50.2621 | 4159 | 287 | 3742 | 622 | 558 | 89.7106 | |
| ckim-isaac | SNP | ti | map_l100_m0_e0 | homalt | 69.6665 | 53.4731 | 99.9279 | 52.0793 | 4157 | 3617 | 4157 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m0_e0 | * | 95.6512 | 99.5927 | 92.0098 | 83.3079 | 4157 | 17 | 4134 | 359 | 8 | 2.2284 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 83.1109 | 76.3884 | 91.1308 | 38.7228 | 4154 | 1284 | 411 | 40 | 40 | 100.0000 | |
| mlin-fermikit | SNP | * | map_l125_m0_e0 | het | 49.1614 | 32.7622 | 98.4323 | 62.8190 | 4149 | 8515 | 4144 | 66 | 3 | 4.5455 | |
| jmaeng-gatk | SNP | ti | map_l150_m1_e0 | homalt | 72.2900 | 56.6125 | 99.9759 | 78.8887 | 4148 | 3179 | 4148 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | HG002compoundhet | * | 40.3635 | 33.5626 | 50.6211 | 62.9728 | 4147 | 8209 | 5624 | 5486 | 4446 | 81.0427 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 45.8313 | 30.1293 | 95.7115 | 55.2632 | 4147 | 9617 | 5825 | 261 | 249 | 95.4023 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.2233 | 97.8292 | 98.6207 | 80.5008 | 4146 | 92 | 4147 | 58 | 16 | 27.5862 | |