PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
11251-11300 / 86044 show all
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
89.3164
86.6966
92.0994
71.2589
44386814523388351
90.4639
egarrison-hhgaINDEL*map_sirenhet
97.9497
98.4472
97.4573
81.1814
443870444611654
46.5517
hfeng-pmm1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.3623
92.9799
100.0000
31.6887
4437335448600
ckim-gatkSNPtimap_l150_m2_e1homalt
73.1394
57.6758
99.9324
81.1976
44373256443732
66.6667
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.3303
92.9589
99.9555
30.3660
4436336448822
100.0000
ghariani-varprowlINDEL*map_sirenhet
91.4200
98.4028
85.3626
87.1990
4436724438761424
55.7162
rpoplin-dv42SNPtimap_l125_m0_e0homalt
99.2059
98.7531
99.6629
68.6730
44355644351514
93.3333
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
73.4052
61.1563
91.7896
37.5114
443228154416395339
85.8228
ndellapenna-hhgaSNPtimap_l250_m1_e0*
98.1834
96.7897
99.6179
87.3096
44321474432179
52.9412
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
73.4486
61.1425
91.9567
37.2269
443128164413386340
88.0829
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
85.1692
86.5403
83.8409
73.2417
44306894405849604
71.1425
ckim-dragenINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.2383
92.7494
100.0000
30.4125
4426346447100
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.2383
92.7494
100.0000
31.0430
4426346447600
astatham-gatkSNPtimap_l250_m2_e1*
92.8549
87.1749
99.3266
90.8364
442565144253012
40.0000
ckim-dragenINDEL*map_sirenhet
97.4637
98.1145
96.8216
84.6377
442385441714514
9.6552
ndellapenna-hhgaINDEL*map_sirenhet
97.8580
98.1145
97.6028
80.6313
442385443810950
45.8716
raldana-dualsentieonINDEL*map_sirenhet
98.4968
98.0479
98.9497
80.0579
4420884428475
10.6383
gduggal-snapvardINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
70.7753
78.9709
64.1209
53.4898
44201177861448204189
86.9087
rpoplin-dv42INDEL*map_sirenhet
98.2013
98.0257
98.3774
81.3714
44198944267337
50.6849
astatham-gatkSNPtimap_l125_m0_e0homalt
99.0916
98.3745
99.8192
66.7668
441873441887
87.5000
gduggal-bwavardINDEL*map_sirenhet
90.9729
98.0035
84.8835
87.6032
4418904408785417
53.1210
ckim-vqsrSNPtvmap_l150_m1_e0het
77.1500
63.6050
98.0249
91.7841
441825284417890
0.0000
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.8269
92.5398
99.3561
30.5284
441635649383231
96.8750
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.9169
99.3027
98.5341
69.1612
44153143696562
95.3846
hfeng-pmm1INDEL*map_sirenhet
98.4945
97.9148
99.0811
80.4769
4414944421413
7.3171
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0708
92.4769
99.9552
27.1601
4413359446622
100.0000
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
70.9699
75.4662
66.9793
63.9738
44111434478523591346
57.0581
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
70.9699
75.4662
66.9793
63.9738
44111434478523591346
57.0581
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
95.7361
92.4350
99.2817
26.1684
441136144233226
81.2500
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0482
92.4350
99.9552
27.1689
4411361446422
100.0000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.6437
99.1903
96.1445
69.5777
4410364364175167
95.4286
ciseli-customINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
45.1864
43.7705
46.6970
66.0012
44095664451751563623
70.2676
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.6979
99.1678
96.2710
69.5061
4409374363169161
95.2663
cchapple-customINDEL*map_sirenhet
96.6860
97.7595
95.6358
82.3179
4407101482122056
25.4545
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.4461
99.1228
95.8251
69.1792
4407394361190182
95.7895
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.5878
99.1228
96.0996
69.2547
4407394361177169
95.4802
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
76.5373
63.7864
95.6597
61.8480
44072502440820055
27.5000
mlin-fermikitSNPtvmap_l125_m1_e0het
60.2787
43.5216
98.0187
62.6103
440757194403891
1.1236
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
96.6143
93.9646
99.4178
33.0736
44062834440265
19.2308
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.3167
94.8139
99.9552
24.2743
4406241445922
100.0000
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.9212
94.7708
99.1715
26.5340
440424344293735
94.5946
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.5970
99.0328
96.2023
69.6244
4403434357172164
95.3488
qzeng-customSNPtvmap_l125_m2_e0homalt
84.1423
73.1594
99.0054
69.1320
4402161543804444
100.0000
jmaeng-gatkSNPtimap_l150_m2_e0homalt
73.2296
57.7731
99.9773
80.4374
44003216440011
100.0000
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
86.3639
77.4336
97.6228
60.1470
43991282439410791
85.0467
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.7653
92.1626
99.6610
30.6426
439837444101515
100.0000
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
81.7362
74.1234
91.0918
40.7803
439715354397430427
99.3023
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.0708
98.8304
99.3124
59.5757
43945243333022
73.3333
jlack-gatkSNPtimap_l125_m0_e0homalt
98.7968
97.8179
99.7955
67.3853
439398439397
77.7778
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.3197
98.8079
95.8756
69.0152
4393534347187182
97.3262