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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
10251-10300 / 86044 show all
ckim-isaacSNP*lowcmp_SimpleRepeat_diTR_11to50het
92.3980
87.5241
97.8468
61.7037
5458778563512411
8.8710
ndellapenna-hhgaINDELD16_PLUS**
85.7572
80.4393
91.8280
64.0820
545713275551494372
75.3036
gduggal-bwafbINDELD16_PLUS**
85.9986
80.3656
92.4807
53.1498
545213325633458450
98.2533
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.1256
89.5940
96.9471
61.4582
54506335335168156
92.8571
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
97.3823
95.0803
99.7986
57.9620
54502825451119
81.8182
gduggal-bwaplatSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
89.2731
80.7561
99.7985
45.8371
5447129854471111
100.0000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
97.3268
94.9581
99.8166
57.9977
54432895444109
90.0000
rpoplin-dv42INDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
96.9793
94.9232
99.1263
57.7580
544129154464847
97.9167
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
74.5876
79.0062
70.6370
92.2018
543814455456226888
3.8801
jmaeng-gatkSNPtvmap_l150_m2_e0het
83.9830
74.9448
95.5001
91.0642
5435181754332566
2.3438
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.9223
92.1642
100.0000
37.2242
5434462549100
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.9223
92.1642
100.0000
37.2242
5434462549100
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
91.8394
89.3309
94.4928
61.1176
54346495319310299
96.4516
ghariani-varprowlINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
61.3598
97.0699
44.8576
61.9828
5433164546567186663
99.1813
raldana-dualsentieonINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
97.1986
94.7313
99.7979
56.1836
54303025431119
81.8182
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
97.1541
94.6964
99.7428
58.3391
542830454291411
78.5714
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.7727
95.5114
96.0354
50.6248
5426255542622495
42.4107
gduggal-bwaplatSNPtvmap_l100_m2_e1homalt
73.6570
58.2993
100.0000
74.6090
54233879542200
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.3994
95.4409
95.3578
49.7393
54222595423264128
48.4848
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.7952
91.9607
99.9635
35.1166
5422474548022
100.0000
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.7952
91.9607
99.9635
35.1166
5422474548022
100.0000
egarrison-hhgaINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
88.3620
96.8555
81.2380
64.5325
5421176594513731329
96.7953
ckim-vqsrSNP*map_l125_m2_e1homalt
47.2295
30.9206
99.9447
86.7543
542112111542132
66.6667
ckim-gatkSNPtvmap_l150_m2_e0het
83.9328
74.7380
95.7075
90.8782
5420183254182438
3.2922
anovak-vgINDEL*map_siren*
72.9885
73.1309
72.8467
79.6324
54191991548920461378
67.3509
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8432
99.7787
99.9077
76.2675
541112541153
60.0000
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8432
99.7787
99.9077
76.2675
541112541153
60.0000
qzeng-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
92.1962
96.6768
88.1125
56.1680
5411186122821657662
39.9517
hfeng-pmm1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8339
99.7418
99.9261
75.6588
540914540942
50.0000
hfeng-pmm1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8339
99.7418
99.9261
75.6588
540914540942
50.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7694
99.7050
99.8338
75.7174
540716540792
22.2222
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7694
99.7050
99.8338
75.7174
540716540792
22.2222
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8338
99.7050
99.9630
71.6940
540716540722
100.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8338
99.7050
99.9630
71.6940
540716540722
100.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8246
99.7050
99.9445
72.0298
540716540732
66.6667
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8246
99.7050
99.9445
72.0298
540716540732
66.6667
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7785
99.6681
99.8891
70.9180
540518540565
83.3333
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7785
99.6681
99.8891
70.9180
540518540565
83.3333
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
76.9390
64.2764
95.8149
73.3607
54053004540323665
27.5424
hfeng-pmm3SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8061
99.6496
99.9630
75.1151
540419540421
50.0000
hfeng-pmm3SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8061
99.6496
99.9630
75.1151
540419540421
50.0000
jlack-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
96.8112
94.2777
99.4846
58.4823
540432854052821
75.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7876
99.6312
99.9445
71.5069
540320540333
100.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7876
99.6312
99.9445
71.5069
540320540333
100.0000
jpowers-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
96.2176
99.5759
93.0785
81.7232
5400235406402172
42.7861
jpowers-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
96.2176
99.5759
93.0785
81.7232
5400235406402172
42.7861
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7596
99.5574
99.9627
68.6053
539924535322
100.0000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7596
99.5574
99.9627
68.6053
539924535322
100.0000
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
96.3614
99.5206
93.3967
80.5951
5397265403382170
44.5026
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
96.3614
99.5206
93.3967
80.5951
5397265403382170
44.5026