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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
10201-10250 / 86044 show all
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.6611
93.5380
100.0000
39.2016
5515381557400
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.6611
93.5380
100.0000
39.2016
5515381557400
egarrison-hhgaINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
97.4712
96.1968
98.7798
51.8157
551421855056843
63.2353
ltrigg-rtg1INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.9814
98.5171
99.4501
63.2766
5514835426309
30.0000
cchapple-customINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
97.8094
96.1793
99.4957
50.2286
551321955242825
89.2857
jmaeng-gatkSNPtvmap_l100_m0_e0het
84.7992
76.2808
95.4593
88.1483
55091713550826210
3.8168
ckim-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.2182
92.7585
99.9459
61.2554
5508430554633
100.0000
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
87.2311
80.0232
95.8659
91.4316
55081375551923831
13.0252
ckim-gatkSNPtvmap_l150_m2_e1het
84.0437
74.9456
95.6560
90.8674
5507184155052509
3.6000
hfeng-pmm2INDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
97.9545
96.0747
99.9093
57.3738
5507225550754
80.0000
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.0123
98.3920
97.6356
72.4102
5507905492133121
90.9774
ckim-vqsrINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.1910
92.7080
99.9459
61.2682
5505433554333
100.0000
ckim-dragenINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
97.7960
96.0049
99.6553
58.3497
550322954931912
63.1579
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.2758
93.3345
99.4086
38.9346
550339360513634
94.4444
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.2758
93.3345
99.4086
38.9346
550339360513634
94.4444
jlack-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.1311
92.6743
99.8558
64.0650
5503435554087
87.5000
anovak-vgINDELI1_5HG002complexvarhet
44.4856
30.2381
84.1220
66.7223
55001268962041171683
58.3262
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
92.4964
96.7963
88.5622
52.1231
54991825482708693
97.8814
ckim-gatkSNPtvmap_l100_m0_e0het
84.8412
76.1423
95.7840
87.8860
54991723549824211
4.5455
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
97.8185
95.8304
99.8909
57.5027
5493239549464
66.6667
gduggal-bwaplatINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
68.9830
54.5121
93.9135
78.7818
549145825493356149
41.8539
gduggal-bwaplatSNP*map_l100_m0_e0homalt
64.1655
47.2461
99.9635
77.1816
54906130548422
100.0000
jmaeng-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0184
92.3880
99.9457
61.4714
5486452552233
100.0000
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
89.1553
96.5499
82.8127
57.5437
5485196548811391055
92.6251
ckim-isaacINDELD6_15*homalt
92.2382
86.6899
98.5453
37.3467
548484254878130
37.0370
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.8801
90.1364
95.7959
52.1555
54836007793342302
88.3041
ckim-isaacSNP*map_l150_m2_e0homalt
63.7998
46.8587
99.9271
70.9027
54826217548244
100.0000
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.2962
90.1200
96.7045
61.7457
54826015370183171
93.4426
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.0609
90.1200
98.3621
57.5242
548260155259266
71.7391
cchapple-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.3820
97.9096
98.8590
53.4408
548011713083151132
87.4172
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
51.3775
37.0578
83.7332
64.5819
5479930652351017480
47.1976
ckim-isaacINDELD16_PLUS**
86.5111
80.7488
93.1589
55.2640
547813065447400246
61.5000
gduggal-bwaplatSNPtvmap_l150_m1_e0*
66.7357
50.1924
99.5456
91.4813
547754355477255
20.0000
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
45.9396
39.7316
54.4469
43.4180
54778308562647073701
78.6276
hfeng-pmm3INDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
97.6815
95.5513
99.9088
57.5685
5477255547853
60.0000
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.3141
90.0214
96.8569
61.4458
54766075362174160
91.9540
ndellapenna-hhgaINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
97.1160
95.4815
98.8074
51.9618
547325954686642
63.6364
anovak-vgINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
76.9105
75.4795
78.3969
40.0251
54701777561415471192
77.0524
qzeng-customSNPtvmap_l150_m2_e1het
83.6864
74.4284
95.5746
89.7620
546918795464253208
82.2134
jpowers-varprowlINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
83.7981
89.6100
78.6942
72.7931
5468634549614881452
97.5806
gduggal-bwaplatSNPtimap_l125_m1_e0homalt
66.2065
49.4975
99.9451
78.1716
54675578546033
100.0000
gduggal-bwavardINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
61.9084
97.6773
45.3144
61.3396
5467130546966006491
98.3485
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1713
92.6560
99.9638
35.0529
5463433552522
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1713
92.6560
99.9638
35.0529
5463433552522
100.0000
asubramanian-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
96.7120
95.2896
98.1776
52.4952
54622707542140133
95.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1530
92.6221
99.9638
35.0611
5461435552322
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1530
92.6221
99.9638
35.0611
5461435552322
100.0000
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.9920
92.6052
99.6360
39.6618
546043654752020
100.0000
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.9920
92.6052
99.6360
39.6618
546043654752020
100.0000
gduggal-snapplatSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
89.0395
80.9340
98.9493
51.2411
5459128654625826
44.8276