PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10201-10250 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6611 | 93.5380 | 100.0000 | 39.2016 | 5515 | 381 | 5574 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.6611 | 93.5380 | 100.0000 | 39.2016 | 5515 | 381 | 5574 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.4712 | 96.1968 | 98.7798 | 51.8157 | 5514 | 218 | 5505 | 68 | 43 | 63.2353 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.9814 | 98.5171 | 99.4501 | 63.2766 | 5514 | 83 | 5426 | 30 | 9 | 30.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.8094 | 96.1793 | 99.4957 | 50.2286 | 5513 | 219 | 5524 | 28 | 25 | 89.2857 | |
| jmaeng-gatk | SNP | tv | map_l100_m0_e0 | het | 84.7992 | 76.2808 | 95.4593 | 88.1483 | 5509 | 1713 | 5508 | 262 | 10 | 3.8168 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2182 | 92.7585 | 99.9459 | 61.2554 | 5508 | 430 | 5546 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 87.2311 | 80.0232 | 95.8659 | 91.4316 | 5508 | 1375 | 5519 | 238 | 31 | 13.0252 | |
| ckim-gatk | SNP | tv | map_l150_m2_e1 | het | 84.0437 | 74.9456 | 95.6560 | 90.8674 | 5507 | 1841 | 5505 | 250 | 9 | 3.6000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.9545 | 96.0747 | 99.9093 | 57.3738 | 5507 | 225 | 5507 | 5 | 4 | 80.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.0123 | 98.3920 | 97.6356 | 72.4102 | 5507 | 90 | 5492 | 133 | 121 | 90.9774 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.1910 | 92.7080 | 99.9459 | 61.2682 | 5505 | 433 | 5543 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.7960 | 96.0049 | 99.6553 | 58.3497 | 5503 | 229 | 5493 | 19 | 12 | 63.1579 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.2758 | 93.3345 | 99.4086 | 38.9346 | 5503 | 393 | 6051 | 36 | 34 | 94.4444 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.2758 | 93.3345 | 99.4086 | 38.9346 | 5503 | 393 | 6051 | 36 | 34 | 94.4444 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.1311 | 92.6743 | 99.8558 | 64.0650 | 5503 | 435 | 5540 | 8 | 7 | 87.5000 | |
| anovak-vg | INDEL | I1_5 | HG002complexvar | het | 44.4856 | 30.2381 | 84.1220 | 66.7223 | 5500 | 12689 | 6204 | 1171 | 683 | 58.3262 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 92.4964 | 96.7963 | 88.5622 | 52.1231 | 5499 | 182 | 5482 | 708 | 693 | 97.8814 | |
| ckim-gatk | SNP | tv | map_l100_m0_e0 | het | 84.8412 | 76.1423 | 95.7840 | 87.8860 | 5499 | 1723 | 5498 | 242 | 11 | 4.5455 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.8185 | 95.8304 | 99.8909 | 57.5027 | 5493 | 239 | 5494 | 6 | 4 | 66.6667 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 68.9830 | 54.5121 | 93.9135 | 78.7818 | 5491 | 4582 | 5493 | 356 | 149 | 41.8539 | |
| gduggal-bwaplat | SNP | * | map_l100_m0_e0 | homalt | 64.1655 | 47.2461 | 99.9635 | 77.1816 | 5490 | 6130 | 5484 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0184 | 92.3880 | 99.9457 | 61.4714 | 5486 | 452 | 5522 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 89.1553 | 96.5499 | 82.8127 | 57.5437 | 5485 | 196 | 5488 | 1139 | 1055 | 92.6251 | |
| ckim-isaac | INDEL | D6_15 | * | homalt | 92.2382 | 86.6899 | 98.5453 | 37.3467 | 5484 | 842 | 5487 | 81 | 30 | 37.0370 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.8801 | 90.1364 | 95.7959 | 52.1555 | 5483 | 600 | 7793 | 342 | 302 | 88.3041 | |
| ckim-isaac | SNP | * | map_l150_m2_e0 | homalt | 63.7998 | 46.8587 | 99.9271 | 70.9027 | 5482 | 6217 | 5482 | 4 | 4 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.2962 | 90.1200 | 96.7045 | 61.7457 | 5482 | 601 | 5370 | 183 | 171 | 93.4426 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.0609 | 90.1200 | 98.3621 | 57.5242 | 5482 | 601 | 5525 | 92 | 66 | 71.7391 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.3820 | 97.9096 | 98.8590 | 53.4408 | 5480 | 117 | 13083 | 151 | 132 | 87.4172 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 51.3775 | 37.0578 | 83.7332 | 64.5819 | 5479 | 9306 | 5235 | 1017 | 480 | 47.1976 | |
| ckim-isaac | INDEL | D16_PLUS | * | * | 86.5111 | 80.7488 | 93.1589 | 55.2640 | 5478 | 1306 | 5447 | 400 | 246 | 61.5000 | |
| gduggal-bwaplat | SNP | tv | map_l150_m1_e0 | * | 66.7357 | 50.1924 | 99.5456 | 91.4813 | 5477 | 5435 | 5477 | 25 | 5 | 20.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 45.9396 | 39.7316 | 54.4469 | 43.4180 | 5477 | 8308 | 5626 | 4707 | 3701 | 78.6276 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.6815 | 95.5513 | 99.9088 | 57.5685 | 5477 | 255 | 5478 | 5 | 3 | 60.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.3141 | 90.0214 | 96.8569 | 61.4458 | 5476 | 607 | 5362 | 174 | 160 | 91.9540 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.1160 | 95.4815 | 98.8074 | 51.9618 | 5473 | 259 | 5468 | 66 | 42 | 63.6364 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 76.9105 | 75.4795 | 78.3969 | 40.0251 | 5470 | 1777 | 5614 | 1547 | 1192 | 77.0524 | |
| qzeng-custom | SNP | tv | map_l150_m2_e1 | het | 83.6864 | 74.4284 | 95.5746 | 89.7620 | 5469 | 1879 | 5464 | 253 | 208 | 82.2134 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 83.7981 | 89.6100 | 78.6942 | 72.7931 | 5468 | 634 | 5496 | 1488 | 1452 | 97.5806 | |
| gduggal-bwaplat | SNP | ti | map_l125_m1_e0 | homalt | 66.2065 | 49.4975 | 99.9451 | 78.1716 | 5467 | 5578 | 5460 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 61.9084 | 97.6773 | 45.3144 | 61.3396 | 5467 | 130 | 5469 | 6600 | 6491 | 98.3485 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.1713 | 92.6560 | 99.9638 | 35.0529 | 5463 | 433 | 5525 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.1713 | 92.6560 | 99.9638 | 35.0529 | 5463 | 433 | 5525 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.7120 | 95.2896 | 98.1776 | 52.4952 | 5462 | 270 | 7542 | 140 | 133 | 95.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.1530 | 92.6221 | 99.9638 | 35.0611 | 5461 | 435 | 5523 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.1530 | 92.6221 | 99.9638 | 35.0611 | 5461 | 435 | 5523 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.9920 | 92.6052 | 99.6360 | 39.6618 | 5460 | 436 | 5475 | 20 | 20 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.9920 | 92.6052 | 99.6360 | 39.6618 | 5460 | 436 | 5475 | 20 | 20 | 100.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 89.0395 | 80.9340 | 98.9493 | 51.2411 | 5459 | 1286 | 5462 | 58 | 26 | 44.8276 | |