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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
9951-10000 / 86044 show all
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
50.5167
46.3701
55.4778
71.4813
58066715729258521482
25.3247
rpoplin-dv42SNPtvmap_l125_m1_e0homalt
99.4262
99.0614
99.7937
67.2577
58055558051212
100.0000
gduggal-bwavardINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
84.1187
95.1327
75.3903
72.1991
5805297574718761702
90.7249
ciseli-customINDELD6_15*homalt
66.6499
91.7325
52.3387
51.6724
5803523578552684853
92.1222
astatham-gatkSNPtvmap_l125_m1_e0homalt
99.4259
99.0102
99.8451
64.3015
580258580296
66.6667
gduggal-snapvardSNPtvmap_l125_m2_e0homalt
98.0723
96.4102
99.7927
68.8173
58012165778129
75.0000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.9393
99.0763
96.8281
71.9883
5792545739188172
91.4894
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.9393
99.0763
96.8281
71.9883
5792545739188172
91.4894
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.8754
99.0250
98.7263
71.7769
57895757367467
90.5405
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.8754
99.0250
98.7263
71.7769
57895757367467
90.5405
ckim-isaacSNPtimap_l125_m1_e0homalt
68.7652
52.4129
99.9482
60.3233
57895256578933
100.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.9716
99.0079
96.9569
71.5543
5788585735180166
92.2222
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.9716
99.0079
96.9569
71.5543
5788585735180166
92.2222
gduggal-snapfbSNPtvmap_l125_m2_e0homalt
97.8112
96.1775
99.5014
78.2474
57872305787297
24.1379
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.7706
98.9737
96.5965
71.2228
5786605733202187
92.5743
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.8791
98.9737
96.8085
71.3456
5786605733189174
92.0635
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.8791
98.9737
96.8085
71.3456
5786605733189174
92.0635
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.7706
98.9737
96.5965
71.2228
5786605733202187
92.5743
ciseli-customSNP*lowcmp_SimpleRepeat_diTR_11to50het
73.8977
92.7678
61.4068
68.2562
578545159193720112
3.0108
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
80.6384
100.0000
57851389000
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
96.0102
95.2734
96.7586
52.9962
57852875791194179
92.2680
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.8690
98.8710
96.8872
72.0428
5780665727184169
91.8478
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.8690
98.8710
96.8872
72.0428
5780665727184169
91.8478
jlack-gatkSNPtvmap_l125_m1_e0homalt
99.1843
98.5666
99.8099
65.3618
5776845776117
63.6364
mlin-fermikitINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
93.3394
94.5919
92.1197
68.0226
57723305728490477
97.3469
ndellapenna-hhgaINDELI16_PLUS**
92.8570
90.4814
95.3607
63.8712
57706075776281194
69.0391
jpowers-varprowlSNPtvmap_l125_m1_e0homalt
98.9113
98.4471
99.3798
71.3800
57699157693625
69.4444
ghariani-varprowlSNPtvmap_l125_m1_e0homalt
98.8683
98.3959
99.3453
69.2128
57669457663824
63.1579
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
82.6140
71.5225
97.7770
46.1187
576422955762131129
98.4733
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
82.6140
71.5225
97.7770
46.1187
576422955762131129
98.4733
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.5285
98.5118
96.5646
71.5859
5759875706203191
94.0887
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.5285
98.5118
96.5646
71.5859
5759875706203191
94.0887
ndellapenna-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
93.4581
91.0630
95.9827
61.5473
57575655758241180
74.6888
ndellapenna-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
93.4581
91.0630
95.9827
61.5473
57575655758241180
74.6888
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.6532
98.4263
98.8811
62.2592
57549256566424
37.5000
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.6532
98.4263
98.8811
62.2592
57549256566424
37.5000
egarrison-hhgaINDELI16_PLUS**
92.9799
90.2305
95.9020
62.0328
57546235757246165
67.0732
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.4102
96.9993
99.8628
49.7674
5754178582486
75.0000
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
98.5556
97.4729
99.6627
53.9495
574714959092020
100.0000
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
98.5556
97.4729
99.6627
53.9495
574714959092020
100.0000
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
95.3424
98.3065
92.5518
69.4000
5747995716460444
96.5217
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
95.3424
98.3065
92.5518
69.4000
5747995716460444
96.5217
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_quadTR_11to50het
91.5844
85.2017
99.0009
65.9710
574699857475817
29.3103
gduggal-snapplatSNP*lowcmp_SimpleRepeat_triTR_11to50*
86.9496
78.1237
98.0235
54.2271
57461609575311613
11.2069
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.0960
96.8307
99.3948
47.7739
574418857483530
85.7143
gduggal-snapplatSNPtvmap_l125_m0_e0*
89.9339
86.5631
93.5778
86.2991
57408915741394208
52.7919
gduggal-snapplatSNPtilowcmp_SimpleRepeat_quadTR_11to50het
89.2479
85.0979
93.8235
76.4116
57391005574237840
10.5820
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
59.2248
49.9739
72.6787
68.3719
57395745734227601993
72.2101
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
71.3469
89.3925
59.3632
66.7339
57396811135577736089
78.3353
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
71.3469
89.3925
59.3632
66.7339
57396811135577736089
78.3353