PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
951-1000 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I1_5 | * | het | 99.3128 | 98.9158 | 99.7130 | 54.8506 | 78184 | 857 | 77471 | 223 | 56 | 25.1121 | |
| cchapple-custom | INDEL | I1_5 | * | het | 99.2835 | 98.8171 | 99.7543 | 58.7353 | 78106 | 935 | 89725 | 221 | 127 | 57.4661 | |
| ghariani-varprowl | INDEL | I1_5 | * | het | 92.7410 | 98.8133 | 87.3718 | 65.8570 | 78102 | 938 | 78120 | 11291 | 10122 | 89.6466 | |
| asubramanian-gatk | INDEL | I1_5 | * | het | 99.1412 | 98.6564 | 99.6308 | 61.4273 | 77979 | 1062 | 77980 | 289 | 149 | 51.5571 | |
| qzeng-custom | INDEL | I1_5 | * | het | 98.4046 | 98.3920 | 98.4173 | 59.0408 | 77770 | 1271 | 82639 | 1329 | 852 | 64.1084 | |
| gduggal-bwavard | INDEL | I1_5 | * | het | 92.1214 | 97.7872 | 87.0762 | 61.9735 | 77292 | 1749 | 76863 | 11408 | 10744 | 94.1795 | |
| ciseli-custom | SNP | * | map_siren | het | 87.4519 | 84.7172 | 90.3691 | 62.2108 | 77085 | 13906 | 76849 | 8190 | 211 | 2.5763 | |
| eyeh-varpipe | INDEL | I1_5 | * | het | 97.6534 | 97.4342 | 97.8735 | 52.4121 | 77013 | 2028 | 76909 | 1671 | 1507 | 90.1855 | |
| ckim-isaac | INDEL | I1_5 | * | het | 97.5134 | 97.3900 | 97.6371 | 50.7018 | 76978 | 2063 | 77021 | 1864 | 1391 | 74.6245 | |
| gduggal-bwafb | INDEL | I1_5 | * | het | 98.0966 | 97.2622 | 98.9454 | 56.5385 | 76877 | 2164 | 82849 | 883 | 649 | 73.4994 | |
| mlin-fermikit | INDEL | I1_5 | * | het | 97.2425 | 97.2166 | 97.2684 | 53.2963 | 76841 | 2200 | 76701 | 2154 | 2108 | 97.8644 | |
| gduggal-snapfb | INDEL | I1_5 | * | het | 94.5346 | 97.1091 | 92.0931 | 57.7460 | 76756 | 2285 | 82322 | 7068 | 1603 | 22.6797 | |
| gduggal-snapvard | INDEL | I1_5 | * | het | 89.2130 | 96.8839 | 82.6678 | 61.9450 | 76578 | 2463 | 82223 | 17239 | 13345 | 77.4117 | |
| dgrover-gatk | INDEL | * | HG002complexvar | * | 99.5612 | 99.4476 | 99.6751 | 58.4475 | 76513 | 425 | 76380 | 249 | 210 | 84.3373 | |
| ckim-vqsr | SNP | ti | map_siren | * | 86.3605 | 76.1935 | 99.6585 | 68.7036 | 76464 | 23891 | 76451 | 262 | 25 | 9.5420 | |
| bgallagher-sentieon | INDEL | * | HG002complexvar | * | 99.4954 | 99.3774 | 99.6137 | 58.2041 | 76459 | 479 | 76328 | 296 | 257 | 86.8243 | |
| astatham-gatk | INDEL | * | HG002complexvar | * | 99.4827 | 99.2916 | 99.6745 | 58.3541 | 76393 | 545 | 76257 | 249 | 212 | 85.1406 | |
| ckim-dragen | INDEL | * | HG002complexvar | * | 99.3944 | 99.2565 | 99.5327 | 58.0987 | 76366 | 572 | 76037 | 357 | 301 | 84.3137 | |
| jlack-gatk | INDEL | * | HG002complexvar | * | 99.2231 | 99.0863 | 99.3603 | 58.0205 | 76235 | 703 | 76113 | 490 | 357 | 72.8571 | |
| ckim-gatk | INDEL | * | HG002complexvar | * | 99.3276 | 99.0226 | 99.6345 | 58.1713 | 76186 | 752 | 76048 | 279 | 226 | 81.0036 | |
| jmaeng-gatk | INDEL | * | HG002complexvar | * | 99.2404 | 98.8731 | 99.6104 | 58.2744 | 76071 | 867 | 75939 | 297 | 248 | 83.5017 | |
| ckim-vqsr | INDEL | * | HG002complexvar | * | 99.2578 | 98.8640 | 99.6548 | 58.2159 | 76064 | 874 | 75924 | 263 | 222 | 84.4106 | |
| mlin-fermikit | SNP | ti | map_siren | * | 84.2869 | 75.7361 | 95.0143 | 45.5372 | 76005 | 24350 | 76001 | 3988 | 3501 | 87.7884 | |
| jli-custom | INDEL | * | HG002complexvar | * | 99.2454 | 98.7574 | 99.7382 | 56.8994 | 75982 | 956 | 75827 | 199 | 151 | 75.8794 | |
| ckim-isaac | SNP | ti | map_siren | * | 86.1284 | 75.6983 | 99.8922 | 49.9174 | 75967 | 24388 | 75975 | 82 | 16 | 19.5122 | |
| rpoplin-dv42 | INDEL | * | HG002complexvar | * | 98.9923 | 98.6301 | 99.3571 | 63.4999 | 75884 | 1054 | 75884 | 491 | 440 | 89.6130 | |
| hfeng-pmm3 | INDEL | * | HG002complexvar | * | 99.1462 | 98.5027 | 99.7982 | 57.0316 | 75786 | 1152 | 75648 | 153 | 115 | 75.1634 | |
| hfeng-pmm1 | INDEL | * | HG002complexvar | * | 99.1357 | 98.4949 | 99.7850 | 57.1428 | 75780 | 1158 | 75642 | 163 | 121 | 74.2331 | |
| ltrigg-rtg2 | INDEL | * | HG002complexvar | * | 98.9919 | 98.4780 | 99.5112 | 54.8986 | 75766 | 1171 | 75523 | 371 | 227 | 61.1860 | |
| hfeng-pmm2 | INDEL | * | HG002complexvar | * | 99.1003 | 98.4520 | 99.7572 | 57.3339 | 75747 | 1191 | 75614 | 184 | 143 | 77.7174 | |
| cchapple-custom | INDEL | * | HG002complexvar | * | 98.8567 | 98.4455 | 99.2713 | 55.5354 | 75742 | 1196 | 78742 | 578 | 462 | 79.9308 | |
| asubramanian-gatk | INDEL | * | HG002complexvar | * | 98.8559 | 98.4299 | 99.2857 | 62.5855 | 75730 | 1208 | 75611 | 544 | 244 | 44.8529 | |
| raldana-dualsentieon | INDEL | * | HG002complexvar | * | 98.9594 | 98.2323 | 99.6974 | 57.2556 | 75578 | 1360 | 75441 | 229 | 196 | 85.5895 | |
| ltrigg-rtg1 | INDEL | * | HG002complexvar | * | 98.8636 | 98.1465 | 99.5912 | 55.0476 | 75511 | 1426 | 75278 | 309 | 190 | 61.4887 | |
| ckim-vqsr | SNP | * | map_siren | het | 90.3081 | 82.7379 | 99.4031 | 73.7019 | 75284 | 15707 | 75273 | 452 | 26 | 5.7522 | |
| jpowers-varprowl | INDEL | I1_5 | * | het | 91.4249 | 95.2000 | 87.9379 | 62.1984 | 75247 | 3794 | 75259 | 10323 | 10077 | 97.6170 | |
| qzeng-custom | INDEL | * | HG002complexvar | * | 97.6731 | 97.4200 | 97.9274 | 54.9567 | 74953 | 1985 | 77253 | 1635 | 731 | 44.7095 | |
| egarrison-hhga | INDEL | * | HG002complexvar | * | 97.4540 | 96.9352 | 97.9784 | 67.1267 | 74580 | 2358 | 74541 | 1538 | 1113 | 72.3667 | |
| eyeh-varpipe | SNP | * | map_l100_m2_e1 | * | 98.6948 | 99.7404 | 97.6710 | 69.5344 | 74543 | 194 | 72256 | 1723 | 51 | 2.9600 | |
| hfeng-pmm3 | SNP | * | map_l100_m2_e1 | * | 99.6666 | 99.5946 | 99.7387 | 65.1913 | 74434 | 303 | 74423 | 195 | 31 | 15.8974 | |
| bgallagher-sentieon | SNP | * | map_l100_m2_e1 | * | 99.4314 | 99.5705 | 99.2927 | 67.0857 | 74416 | 321 | 74405 | 530 | 81 | 15.2830 | |
| hfeng-pmm2 | SNP | * | map_l100_m2_e1 | * | 99.5245 | 99.5678 | 99.4812 | 67.6245 | 74414 | 323 | 74403 | 388 | 47 | 12.1134 | |
| ndellapenna-hhga | INDEL | * | HG002complexvar | * | 97.2866 | 96.6882 | 97.8924 | 67.2163 | 74390 | 2548 | 74363 | 1601 | 1150 | 71.8301 | |
| ciseli-custom | INDEL | I1_5 | * | het | 91.4560 | 94.1106 | 88.9472 | 61.0454 | 74385 | 4655 | 74801 | 9295 | 7503 | 80.7208 | |
| dgrover-gatk | SNP | * | map_l100_m2_e1 | * | 99.4995 | 99.4835 | 99.5154 | 68.3658 | 74351 | 386 | 74340 | 362 | 79 | 21.8232 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e1 | * | 99.3646 | 99.4032 | 99.3261 | 65.5411 | 74291 | 446 | 74280 | 504 | 23 | 4.5635 | |
| hfeng-pmm1 | SNP | * | map_l100_m2_e1 | * | 99.5878 | 99.3979 | 99.7783 | 64.6489 | 74287 | 450 | 74276 | 165 | 49 | 29.6970 | |
| jli-custom | SNP | * | map_l100_m2_e1 | * | 99.4761 | 99.3323 | 99.6202 | 63.1271 | 74238 | 499 | 74235 | 283 | 79 | 27.9152 | |
| ckim-dragen | SNP | * | map_l100_m2_e1 | * | 98.6686 | 99.2949 | 98.0501 | 69.8284 | 74210 | 527 | 74221 | 1476 | 153 | 10.3659 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e1 | * | 99.4091 | 99.2775 | 99.5411 | 65.1919 | 74197 | 540 | 74186 | 342 | 199 | 58.1871 | |