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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
9801-9850 / 86044 show all
rpoplin-dv42INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.3984
98.6070
98.1907
77.5143
6017856024111100
90.0901
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.1424
95.1756
99.1922
62.0377
601730560174941
83.6735
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.1424
95.1756
99.1922
62.0377
601730560174941
83.6735
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.1733
95.1598
99.2739
61.8292
601630660164438
86.3636
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.1733
95.1598
99.2739
61.8292
601630660164438
86.3636
astatham-gatkSNPtvmap_l125_m2_e1homalt
99.4462
99.0451
99.8506
66.8391
601658601696
66.6667
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
96.9463
95.1598
98.8011
63.5083
601630660167359
80.8219
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.9463
95.1598
98.8011
63.5083
601630660167359
80.8219
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.9717
99.0613
98.8823
57.7880
60155761937023
32.8571
jlack-gatkINDELI16_PLUS**
95.3468
94.3077
96.4091
70.3461
60143636014224155
69.1964
ckim-vqsrSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.3474
98.7681
99.9335
54.7798
601375601344
100.0000
jpowers-varprowlSNP*lowcmp_SimpleRepeat_diTR_11to50het
95.5170
96.4240
94.6270
76.4781
6013223607634514
4.0580
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.3392
99.0283
99.6520
55.6062
60135960132119
90.4762
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.4045
98.9789
99.8338
50.4652
6010626006105
50.0000
hfeng-pmm1SNPtvmap_l125_m2_e0homalt
99.7923
99.8006
99.7840
69.7785
6005126005135
38.4615
hfeng-pmm2SNPtvmap_l125_m2_e0homalt
99.7840
99.8006
99.7674
69.8673
6005126005145
35.7143
ghariani-varprowlSNP*lowcmp_SimpleRepeat_diTR_11to50het
88.8712
96.2797
82.5214
76.5304
60042326081128813
1.0093
raldana-dualsentieonINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0343
98.3940
99.6831
76.6868
60049859761910
52.6316
eyeh-varpipeSNPtvmap_l125_m2_e0homalt
99.8247
99.7839
99.8655
72.1762
600413594184
50.0000
ltrigg-rtg1SNPtvmap_l125_m2_e0homalt
99.8420
99.7507
99.9334
68.3459
600215600344
100.0000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.1659
98.5874
99.7512
54.8686
6002866015153
20.0000
hfeng-pmm3SNPtvmap_l125_m2_e0homalt
99.7590
99.7341
99.7838
69.7058
6001166001135
38.4615
ckim-isaacSNPtvmap_l125_m1_e0het
74.2974
59.2633
99.5522
74.3164
600141256003277
25.9259
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.0384
94.9067
99.2681
58.6918
600032259684425
56.8182
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.0384
94.9067
99.2681
58.6918
600032259684425
56.8182
gduggal-bwaplatSNPtimap_l125_m0_e0*
63.7993
47.0146
99.2230
91.1459
6000676260024716
34.0426
egarrison-hhgaSNPtvmap_l125_m2_e0homalt
99.7920
99.6676
99.9167
69.5036
599720599755
100.0000
raldana-dualsentieonSNPtvmap_l125_m2_e0homalt
99.7837
99.6676
99.9000
65.8746
599720599763
50.0000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
67.4226
63.3961
71.9952
36.3292
59963462604423512331
99.1493
ltrigg-rtg2SNPtvmap_l125_m2_e0homalt
99.7836
99.6344
99.9333
66.1132
599522599643
75.0000
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
81.6793
71.3911
95.4321
75.7937
59942402599628772
25.0871
jli-customINDELI16_PLUS**
96.2725
93.9627
98.6987
64.2188
599238559927951
64.5570
bgallagher-sentieonSNPtvmap_l125_m2_e0homalt
99.7171
99.5845
99.8500
66.6926
599225599296
66.6667
jli-customSNPtvmap_l125_m2_e0homalt
99.7336
99.5679
99.8999
65.8835
599126599165
83.3333
ndellapenna-hhgaSNPtvmap_l125_m2_e0homalt
99.7253
99.5679
99.8833
68.5442
599126599176
85.7143
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
96.9087
96.8629
96.9546
55.9921
5990194604919095
50.0000
mlin-fermikitINDELI6_15*homalt
94.2236
95.9609
92.5481
47.3706
59872526011484481
99.3802
jlack-gatkSNPtvmap_l125_m2_e1homalt
99.1882
98.5677
99.8166
67.8547
5987875987117
63.6364
gduggal-snapvardSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.0804
98.3246
99.8480
50.5717
5986102591395
55.5556
ltrigg-rtg1INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.6644
98.0498
99.2867
71.5861
59831195985437
16.2791
gduggal-bwavardSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.0887
98.2753
99.9156
51.4864
5983105591954
80.0000
hfeng-pmm3SNP*lowcmp_SimpleRepeat_diTR_11to50het
97.8414
95.9429
99.8165
68.2488
59832535983114
36.3636
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
78.2556
64.3957
99.7182
32.7011
5983330860151717
100.0000
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
78.2556
64.3957
99.7182
32.7011
5983330860151717
100.0000
ckim-dragenSNPtvmap_l125_m2_e0homalt
99.5838
99.4183
99.7499
65.0891
59823559821513
86.6667
ckim-isaacINDELI6_15*hetalt
81.9509
69.9567
98.9089
28.8855
5982256959836652
78.7879
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
79.0557
93.1620
68.6595
75.7645
5981439592627052382
88.0591
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
79.0557
93.1620
68.6595
75.7645
5981439592627052382
88.0591
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
90.9106
86.5682
95.7115
51.1635
59819284419198174
87.8788
jpowers-varprowlSNPtvmap_l125_m2_e1homalt
98.9247
98.4524
99.4016
73.5688
59809459803625
69.4444