PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9751-9800 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7449 | 99.5401 | 99.9505 | 54.6217 | 6060 | 28 | 6060 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | homalt | 99.8435 | 99.7530 | 99.9341 | 68.3791 | 6059 | 15 | 6065 | 4 | 4 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | map_l125_m2_e1 | homalt | 99.7612 | 99.7366 | 99.7859 | 69.7479 | 6058 | 16 | 6058 | 13 | 5 | 38.4615 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7530 | 99.7694 | 99.7366 | 55.3284 | 6058 | 14 | 6058 | 16 | 16 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7119 | 99.4908 | 99.9340 | 54.5993 | 6057 | 31 | 6057 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.3852 | 95.7925 | 99.0319 | 61.6504 | 6056 | 266 | 6342 | 62 | 53 | 85.4839 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.3852 | 95.7925 | 99.0319 | 61.6504 | 6056 | 266 | 6342 | 62 | 53 | 85.4839 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7447 | 99.7365 | 99.7529 | 55.2418 | 6056 | 16 | 6056 | 15 | 15 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | map_l100_m0_e0 | * | 70.5375 | 54.6373 | 99.4907 | 88.8156 | 6056 | 5028 | 6056 | 31 | 10 | 32.2581 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.3551 | 95.7767 | 98.9864 | 63.1106 | 6055 | 267 | 6055 | 62 | 49 | 79.0323 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.3551 | 95.7767 | 98.9864 | 63.1106 | 6055 | 267 | 6055 | 62 | 49 | 79.0323 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4572 | 99.2298 | 99.6856 | 78.8294 | 6055 | 47 | 6025 | 19 | 12 | 63.1579 | |
| egarrison-hhga | SNP | tv | map_l125_m2_e1 | homalt | 99.7940 | 99.6707 | 99.9175 | 69.5482 | 6054 | 20 | 6054 | 5 | 5 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1869 | 99.2134 | 99.1605 | 78.4314 | 6054 | 48 | 6024 | 51 | 24 | 47.0588 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e1 | homalt | 99.7857 | 99.6707 | 99.9010 | 65.8803 | 6054 | 20 | 6054 | 6 | 3 | 50.0000 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.8177 | 99.4251 | 96.2614 | 56.7778 | 6053 | 35 | 6025 | 234 | 108 | 46.1538 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 54.4770 | 39.2554 | 88.9798 | 82.4941 | 6052 | 9365 | 6088 | 754 | 644 | 85.4111 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2443 | 95.7292 | 98.8082 | 63.2331 | 6052 | 270 | 6052 | 73 | 63 | 86.3014 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2443 | 95.7292 | 98.8082 | 63.2331 | 6052 | 270 | 6052 | 73 | 63 | 86.3014 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e1 | homalt | 99.7857 | 99.6378 | 99.9340 | 66.1624 | 6052 | 22 | 6058 | 4 | 3 | 75.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.6888 | 99.4087 | 97.9793 | 56.5956 | 6052 | 36 | 6061 | 125 | 121 | 96.8000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 84.5108 | 74.7498 | 97.2039 | 41.6721 | 6051 | 2044 | 6049 | 174 | 172 | 98.8506 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3667 | 99.1478 | 99.5866 | 78.9281 | 6050 | 52 | 6022 | 25 | 8 | 32.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.3373 | 95.6976 | 99.0342 | 63.1411 | 6050 | 272 | 6050 | 59 | 49 | 83.0508 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.3373 | 95.6976 | 99.0342 | 63.1411 | 6050 | 272 | 6050 | 59 | 49 | 83.0508 | |
| bgallagher-sentieon | SNP | tv | map_l125_m2_e1 | homalt | 99.7197 | 99.5884 | 99.8514 | 66.7125 | 6049 | 25 | 6049 | 9 | 6 | 66.6667 | |
| ndellapenna-hhga | SNP | tv | map_l125_m2_e1 | homalt | 99.7279 | 99.5719 | 99.8844 | 68.5879 | 6048 | 26 | 6048 | 7 | 6 | 85.7143 | |
| jli-custom | SNP | tv | map_l125_m2_e1 | homalt | 99.7361 | 99.5719 | 99.9009 | 65.9064 | 6048 | 26 | 6048 | 6 | 5 | 83.3333 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.1768 | 97.7361 | 96.6239 | 63.2047 | 6044 | 140 | 5953 | 208 | 24 | 11.5385 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 83.0248 | 72.2847 | 97.5133 | 68.6969 | 6043 | 2317 | 6039 | 154 | 132 | 85.7143 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 83.0248 | 72.2847 | 97.5133 | 68.6969 | 6043 | 2317 | 6039 | 154 | 132 | 85.7143 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4894 | 99.5224 | 99.4565 | 52.2754 | 6043 | 29 | 6039 | 33 | 33 | 100.0000 | |
| ckim-dragen | SNP | tv | map_l125_m2_e1 | homalt | 99.5877 | 99.4238 | 99.7522 | 65.1046 | 6039 | 35 | 6039 | 15 | 13 | 86.6667 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 93.1550 | 88.6524 | 98.1395 | 56.7404 | 6039 | 773 | 844 | 16 | 16 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 73.0196 | 90.4177 | 61.2365 | 38.8818 | 6039 | 640 | 15303 | 9687 | 8838 | 91.2357 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2768 | 95.4919 | 99.1297 | 62.3353 | 6037 | 285 | 6037 | 53 | 43 | 81.1321 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2768 | 95.4919 | 99.1297 | 62.3353 | 6037 | 285 | 6037 | 53 | 43 | 81.1321 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1608 | 98.9184 | 99.4045 | 76.5307 | 6036 | 66 | 6009 | 36 | 20 | 55.5556 | |
| dgrover-gatk | SNP | tv | map_l125_m2_e1 | homalt | 99.5624 | 99.2591 | 99.8675 | 67.1759 | 6029 | 45 | 6029 | 8 | 5 | 62.5000 | |
| ckim-isaac | SNP | ti | map_l125_m2_e0 | homalt | 69.3312 | 53.0727 | 99.9503 | 64.5277 | 6028 | 5330 | 6028 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2583 | 98.7709 | 99.7505 | 77.4015 | 6027 | 75 | 5998 | 15 | 5 | 33.3333 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5211 | 99.2589 | 99.7847 | 51.9691 | 6027 | 45 | 6024 | 13 | 8 | 61.5385 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.8029 | 98.7545 | 98.8513 | 71.4513 | 6026 | 76 | 6024 | 70 | 13 | 18.5714 | |
| rpoplin-dv42 | INDEL | I6_15 | * | homalt | 97.7056 | 96.5700 | 98.8683 | 48.6914 | 6025 | 214 | 6028 | 69 | 68 | 98.5507 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2415 | 98.7053 | 99.7836 | 77.2969 | 6023 | 79 | 5994 | 13 | 3 | 23.0769 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.6034 | 98.8995 | 98.3091 | 54.0884 | 6021 | 67 | 6221 | 107 | 43 | 40.1869 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e1 | homalt | 99.4877 | 99.1110 | 99.8673 | 71.0512 | 6020 | 54 | 6020 | 8 | 6 | 75.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 92.0796 | 97.3480 | 87.3522 | 68.3694 | 6020 | 164 | 5912 | 856 | 19 | 2.2196 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1836 | 98.6234 | 99.7502 | 77.6187 | 6018 | 84 | 5989 | 15 | 7 | 46.6667 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e1 | homalt | 99.4382 | 99.0780 | 99.8010 | 69.8334 | 6018 | 56 | 6018 | 12 | 12 | 100.0000 | |