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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 191 192 193 194 195 196 197 198 199 ... 1720 1721 » 9701-9750 / 86044 show all
jli-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9097	99.9179	99.9015	54.3245	6083	5	6083	6	4	66.6667
jpowers-varprowl	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	70.1373	58.7236	87.0583	47.6620	6082	4275	6061	901	793	88.0133
rpoplin-dv42	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9507	99.9014	100.0000	54.7268	6082	6	6082	0	0
ckim-isaac	SNP	ti	map_l125_m2_e1	homalt	69.3119	53.0546	99.9342	64.5595	6079	5379	6079	4	4	100.0000
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	94.6607	91.0166	98.6088	31.6968	6079	600	5954	84	72	85.7143
qzeng-custom	INDEL	I6_15	HG002compoundhet	*	75.9258	69.2571	84.0157	36.6439	6078	2698	5992	1140	884	77.5439
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	93.8698	91.3024	96.5857	72.7788	6078	579	6167	218	97	44.4954
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8767	99.8193	99.9342	54.4187	6077	11	6077	4	4	100.0000
eyeh-varpipe	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7839	99.8029	99.7650	51.9403	6076	12	5943	14	7	50.0000
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8931	99.7865	100.0000	53.0439	6075	13	6078	0	0
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8849	99.7700	100.0000	52.7633	6074	14	6077	0	0
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.4560	96.0456	98.9084	63.8644	6072	250	6071	67	60	89.5522
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.4560	96.0456	98.9084	63.8644	6072	250	6071	67	60	89.5522
gduggal-snapfb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	92.5170	90.9118	94.1799	42.0147	6072	607	10761	665	217	32.6316
ckim-isaac	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.3003	96.8730	99.7704	41.9223	6072	196	6083	14	11	78.5714
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7945	99.7208	99.8684	54.9696	6071	17	6072	8	7	87.5000
qzeng-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7774	99.7208	99.8342	53.5684	6071	17	6021	10	8	80.0000
ndellapenna-hhga	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7617	99.7043	99.8191	54.9748	6070	18	6071	11	9	81.8182
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7781	99.9671	99.5898	57.9684	6070	2	6070	25	24	96.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7781	99.9671	99.5898	57.9481	6070	2	6070	25	24	96.0000
ghariani-varprowl	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	70.0058	58.6077	86.9078	48.1851	6070	4287	6054	912	765	83.8816
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7781	99.9506	99.6061	57.9561	6069	3	6069	24	23	95.8333
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7043	99.9506	99.4592	57.8271	6069	3	6069	33	32	96.9697
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7617	99.9506	99.5734	57.9016	6069	3	6069	26	25	96.1538
bgallagher-sentieon	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4743	99.4428	99.5058	77.9305	6068	34	6040	30	14	46.6667
dgrover-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5152	99.4428	99.5877	78.3498	6068	34	6039	25	11	44.0000
ndellapenna-hhga	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	98.2992	97.3060	99.3129	66.5408	6068	168	6071	42	21	50.0000
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7452	99.9341	99.5570	56.8831	6068	4	6068	27	27	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4251	99.4428	99.4073	78.7466	6068	34	6038	36	13	36.1111
raldana-dualsentieon	INDEL	I16_PLUS	*	*	96.7701	95.1388	98.4583	67.0904	6067	310	6067	95	85	89.4737
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6714	99.9177	99.4264	57.8940	6067	5	6067	35	34	97.1429
gduggal-snapfb	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	66.5254	97.2739	50.5473	74.9203	6066	170	6280	6144	168	2.7344
anovak-vg	SNP	ti	map_l150_m2_e0	homalt	88.3955	79.6350	99.3218	72.4413	6065	1551	6004	41	36	87.8049
jli-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8026	99.8847	99.7206	56.2796	6065	7	6068	17	17	100.0000
ckim-dragen	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4656	99.3773	99.5540	78.3693	6064	38	6027	27	7	25.9259
jli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.4217	95.9190	98.9723	59.1578	6064	258	6067	63	48	76.1905
jli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.4217	95.9190	98.9723	59.1578	6064	258	6067	63	48	76.1905
ciseli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	85.2279	98.0433	75.3754	62.9512	6063	121	6073	1984	52	2.6210
gduggal-snapfb	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.4911	99.5894	99.3930	57.8569	6063	25	6059	37	15	40.5405
gduggal-snapvard	SNP	ti	HG002compoundhet	homalt	89.4254	81.9989	98.3311	34.6481	6063	1331	5067	86	63	73.2558
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7040	99.5894	99.8189	55.7321	6063	25	6063	11	10	90.9091
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	81.6774	94.4237	71.9631	77.4935	6062	358	6078	2368	2066	87.2466
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	81.6774	94.4237	71.9631	77.4935	6062	358	6078	2368	2066	87.2466
hfeng-pmm1	SNP	tv	map_l125_m2_e1	homalt	99.7942	99.8024	99.7860	69.8227	6062	12	6062	13	5	38.4615
hfeng-pmm2	SNP	tv	map_l125_m2_e1	homalt	99.7860	99.8024	99.7696	69.9104	6062	12	6062	14	5	35.7143
astatham-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4739	99.3445	99.6037	78.1364	6062	40	6032	24	14	58.3333
eyeh-varpipe	SNP	tv	map_l125_m2_e1	homalt	99.8263	99.7860	99.8666	72.2636	6061	13	5990	8	4	50.0000
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4911	99.8188	99.1656	57.1479	6061	11	6061	51	49	96.0784
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7285	99.8188	99.6383	55.6923	6061	11	6061	22	22	100.0000
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5645	99.8024	99.3278	58.3031	6060	12	6058	41	41	100.0000

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