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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
9551-9600 / 86044 show all
ckim-gatkINDELI6_15*homalt
97.7332
99.8557
95.6989
54.8919
623096230280278
99.2857
ltrigg-rtg2INDELD6_15*homalt
99.1477
98.4508
99.8545
42.0407
622898617797
77.7778
gduggal-bwafbINDELI6_15*hetalt
81.7221
72.8336
93.0818
54.0993
622823231480110109
99.0909
jmaeng-gatkINDELI6_15*homalt
97.4945
99.7916
95.3008
55.3726
6226136226307303
98.6971
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
66.9535
0.0000
0.0000
62243072000
astatham-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.6158
99.2821
99.9518
44.5938
622345622332
66.6667
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_diTR_11to50het
99.7675
99.7915
99.7435
70.0911
62231362231612
75.0000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_diTR_11to50het
99.6796
99.7755
99.5839
69.4549
62221462222619
73.0769
dgrover-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50het
99.7595
99.7755
99.7435
70.4864
62221462221612
75.0000
ckim-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50het
99.7595
99.7595
99.7595
70.6652
62211562211512
80.0000
ckim-dragenINDELI6_15*homalt
96.6294
99.7115
93.7321
54.6498
6221186221416414
99.5192
ckim-dragenSNP*lowcmp_SimpleRepeat_diTR_11to50het
99.7361
99.7595
99.7127
70.2512
62211562481814
77.7778
raldana-dualsentieonINDELI6_15*homalt
97.3324
99.7115
95.0642
52.3622
6221186221323318
98.4520
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.4365
96.8847
97.9946
71.7201
6220200620612719
14.9606
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.4365
96.8847
97.9946
71.7201
6220200620612719
14.9606
jmaeng-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50het
99.7273
99.7114
99.7433
70.7941
62181862181611
68.7500
jli-customINDELI6_15*homalt
98.3861
99.6634
97.1411
49.1984
6218216218183180
98.3607
jlack-gatkINDELI6_15*homalt
95.8674
99.6474
92.3637
53.5505
6217226217514507
98.6381
gduggal-bwafbINDELI6_15HG002compoundhethetalt
82.7582
72.8242
95.8306
40.7336
6217232014716463
98.4375
hfeng-pmm2INDELI6_15*homalt
98.0364
99.6314
96.4918
51.1007
6216236216226223
98.6726
jli-customSNP*lowcmp_SimpleRepeat_diTR_11to50het
99.6872
99.6632
99.7112
69.9339
62152162151812
66.6667
ckim-vqsrSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.5515
99.1544
99.9518
47.1169
621553621533
100.0000
ckim-vqsrSNP*lowcmp_SimpleRepeat_diTR_11to50het
99.7112
99.6472
99.7752
70.6918
62142262141412
85.7143
hfeng-pmm1INDELI6_15*homalt
98.1442
99.5993
96.7310
48.9389
6214256214210209
99.5238
hfeng-pmm3INDELI6_15*homalt
98.2839
99.5993
97.0028
48.9358
6214256214192191
99.4792
cchapple-customINDELI6_15*homalt
98.0872
99.5993
96.6202
48.7819
6214256175216214
99.0741
jlack-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50het
99.4314
99.5510
99.3121
70.6126
62082862084321
48.8372
cchapple-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.0389
96.6511
99.4672
62.4367
6205215119486447
73.4375
cchapple-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.0389
96.6511
99.4672
62.4367
6205215119486447
73.4375
ckim-isaacSNPtiHG002compoundhethomalt
91.0386
83.8788
99.5347
26.2921
6202119262032924
82.7586
mlin-fermikitSNPtvmap_l100_m2_e1homalt
72.1476
66.6523
78.6303
53.6694
62003102620016851598
94.8368
ciseli-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
83.3290
92.2710
75.9669
53.2043
619651962461976523
26.4676
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
46.1868
42.3753
50.7516
72.8442
61948423783376011738
22.8654
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
95.7862
96.4642
95.1177
63.6639
619322714027720615
85.4167
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
95.7862
96.4642
95.1177
63.6639
619322714027720615
85.4167
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
88.0705
92.7235
83.8622
38.1946
6193486618411901162
97.6471
eyeh-varpipeINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
56.5705
40.1699
95.6035
76.3129
6193922410155467451
96.5739
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_diTR_11to50het
99.3904
99.2623
99.5188
66.4857
6190466205305
16.6667
asubramanian-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.3498
98.7237
99.9839
45.5999
618880619311
100.0000
egarrison-hhgaINDELD6_15*homalt
96.8232
97.8027
95.8630
51.8789
6187139618726786
32.2097
gduggal-bwavardSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.1182
98.6758
99.5645
45.6045
61858361732713
48.1481
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
57.1959
83.7351
43.4309
41.9942
61831201621880998063
99.5555
mlin-fermikitSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.0073
98.6439
99.3734
43.8166
61838561853938
97.4359
ndellapenna-hhgaINDELD6_15*homalt
95.9125
97.7395
94.1526
53.1263
61831436183384166
43.2292
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_diTR_11to50het
99.2624
99.1501
99.3749
64.2935
6183536200395
12.8205
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
94.3169
89.7764
99.3411
33.3446
618270419601313
100.0000
dgrover-gatkINDELI16_PLUS**
97.6461
96.9265
98.3766
71.1206
6181196618110280
78.4314
gduggal-snapvardSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
98.8156
98.5801
99.0522
46.3316
6179896166597
11.8644
asubramanian-gatkINDELI6_15*homalt
97.0392
99.0223
95.1340
55.6784
6178616178316307
97.1519
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6597
99.8868
99.4337
56.4666
617776145352
5.7143