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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
901-950 / 86044 show all
ghariani-varprowlINDELD1_5*het
92.9952
99.3560
87.3999
64.6847
87009564869831254010606
84.5774
egarrison-hhgaINDELD1_5*het
97.6225
99.3251
95.9773
54.9367
869835918741836643399
92.7675
cchapple-customINDELD1_5*het
99.5112
99.3229
99.7003
54.7900
8698159397146292149
51.0274
hfeng-pmm3INDELD1_5*het
99.5975
99.3183
99.8783
55.2507
869775978698210653
50.0000
hfeng-pmm2INDELD1_5*het
99.5604
99.3114
99.8107
56.3200
869716038697716571
43.0303
mlin-fermikitINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
92.8446
92.0624
93.6403
70.3210
8695274978681358965729
97.1676
hfeng-pmm1INDELD1_5*het
99.5580
99.2715
99.8461
55.4481
869366388694013451
38.0597
raldana-dualsentieonINDELD1_5*het
99.5220
99.2680
99.7773
56.3227
8693364186937194136
70.1031
ndellapenna-hhgaINDELD1_5*het
97.6637
99.1299
96.2402
54.0039
868127628733734123186
93.3763
asubramanian-gatkINDELD1_5*het
99.3754
99.1025
99.6499
59.9427
8678878686804305126
41.3115
gduggal-bwavardINDELD1_5*het
93.4417
99.0111
88.4655
62.3753
8670886685823111909864
88.1501
qzeng-customINDELD1_5*het
98.6409
98.8844
98.3986
58.7330
865979779610315641050
67.1355
ltrigg-rtg1INDELD1_5*het
99.2847
98.8627
99.7103
52.7629
865789968637825152
20.7171
eyeh-varpipeINDELD1_5*het
98.8729
98.5350
99.2132
51.9513
86291128385238676474
70.1183
gduggal-bwafbINDELD1_5*het
98.9590
98.4961
99.4263
56.5657
86257131792550534170
31.8352
ckim-isaacSNPtvHG002complexvarhomalt
95.1060
90.6877
99.9768
19.5838
862548857862772016
80.0000
gduggal-snapvardINDELD1_5*het
88.4948
98.0268
80.6523
58.4318
8584417281159492781521843
78.5296
ckim-isaacINDELD1_5*het
97.9869
97.6340
98.3423
46.0249
855022072850131433986
68.8067
mlin-fermikitINDELD1_5*het
97.6071
97.5792
97.6350
51.6497
8545421208533320671958
94.7267
gduggal-snapfbINDELD1_5*het
96.7358
97.4935
95.9898
56.7536
853792195913423816775
20.3092
jpowers-varprowlINDELD1_5*het
92.8158
97.3223
88.7081
61.6875
852292345852211084810534
97.1055
ckim-gatkSNP*map_sirenhet
95.8468
93.5653
98.2423
71.0090
851365855851221523109
7.1569
jmaeng-gatkSNP*map_sirenhet
95.7096
93.4477
98.0837
71.4678
850295962850151661101
6.0807
gduggal-bwaplatSNPtimap_siren*
90.8656
83.6301
99.4716
68.7099
839271642883958446118
26.4574
anovak-vgSNP*map_sirenhet
84.8820
91.5981
79.0836
63.1144
83346764582394217924974
22.8249
ciseli-customINDELD1_5*het
91.4315
94.8260
88.2716
63.1491
83041453183497110943726
33.5857
anovak-vgINDELD1_5*het
92.1131
94.4127
89.9228
55.4448
8268148938677197246623
68.1098
anovak-vgINDELI1_5**
54.8287
54.8578
54.7996
53.4671
8265168013848446998259671
85.2662
eyeh-varpipeINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
87.5783
85.5583
89.6959
70.2246
80809136401390871597815625
97.7907
gduggal-snapfbINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
88.3624
85.5319
91.3867
71.3799
80784136658551680604292
53.2506
dgrover-gatkINDELI1_5*het
99.6919
99.6799
99.7038
61.0342
7878825378770234135
57.6923
ckim-gatkINDELI1_5*het
99.5633
99.6774
99.4495
61.8943
7878625578766436147
33.7156
bgallagher-sentieonINDELI1_5*het
99.6628
99.6660
99.6596
60.0640
7877726478760269153
56.8773
ckim-dragenINDELI1_5*het
99.4703
99.6091
99.3319
60.8221
7873230978650529129
24.3856
hfeng-pmm1INDELI1_5*het
99.6416
99.5559
99.7275
59.6258
7869035178673215113
52.5581
hfeng-pmm3INDELI1_5*het
99.7016
99.5433
99.8604
59.2337
786803617866111051
46.3636
qzeng-customSNP*map_sirenhet
92.1648
86.4602
98.6753
68.8551
7867112320779141046710
67.8776
jmaeng-gatkINDELI1_5*het
99.3909
99.5129
99.2691
62.3588
7865638578640579142
24.5250
ckim-vqsrINDELI1_5*het
99.5998
99.5116
99.6881
61.9903
7865538678634246145
58.9431
rpoplin-dv42INDELI1_5*het
99.3402
99.5015
99.1794
60.2585
7864739478679651605
92.9339
hfeng-pmm2INDELI1_5*het
99.6023
99.4952
99.7096
59.9116
7864239978624229130
56.7686
jlack-gatkINDELI1_5*het
99.1970
99.4952
98.9006
61.6913
7864239978625874231
26.4302
jli-customINDELI1_5*het
99.6300
99.4800
99.7804
58.4682
7863041178600173112
64.7399
astatham-gatkINDELI1_5*het
99.5857
99.4610
99.7107
60.4880
7861542678596228141
61.8421
ltrigg-rtg2INDELI1_5*het
99.5106
99.4497
99.5716
56.0879
786064357786833592
27.4627
gduggal-bwaplatSNP*map_sirenhet
92.3406
86.3635
99.2066
74.9301
785831240878653629157
24.9603
gduggal-bwaplatINDELD1_5*het
94.1987
89.7070
99.1640
66.4739
78560901478527662219
33.0816
egarrison-hhgaINDELI1_5*het
99.4365
99.3775
99.4956
58.7039
7854949278511398185
46.4824
raldana-dualsentieonINDELI1_5*het
99.5073
99.2827
99.7331
57.9285
7847456778457210142
67.6190
ndellapenna-hhgaINDELI1_5*het
99.3796
99.2245
99.5353
57.8169
7842861378394366178
48.6339