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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
9351-9400 / 86044 show all
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
86.5437
77.6835
97.6853
56.4907
649918676499154131
85.0649
raldana-dualsentieonINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.6332
95.3758
100.0000
31.9545
6497315651400
ckim-dragenINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.3919
95.3611
99.5111
32.7822
649631665133232
100.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
94.4844
97.2451
91.8762
38.9766
64951846322559498
89.0877
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.5651
93.9933
99.2815
52.4049
649441564944742
89.3617
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
96.8242
94.2928
99.4953
23.7079
649339365063333
100.0000
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
63.5479
97.2152
47.2013
46.3823
6493186652773017199
98.6029
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.0207
95.3171
98.7864
34.4210
649331965128077
96.2500
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.4702
95.0930
99.9692
25.5353
6492335650121
50.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
94.2777
89.5819
99.4931
26.8704
649275564773325
75.7576
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
96.8165
94.2782
99.4953
23.7106
649239465053333
100.0000
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.2807
95.0784
99.5875
32.3304
649133665182727
100.0000
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
76.8075
94.3048
64.7869
87.6558
649139263993478109
3.1340
ndellapenna-hhgaSNPtvmap_l125_m0_e0*
98.6916
97.8284
99.5702
72.2163
648714464872813
46.4286
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
96.4617
94.1911
98.8445
26.3329
648640065017673
96.0526
jpowers-varprowlINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
44.0104
40.4063
48.3203
59.8954
64849563648769386879
99.1496
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
96.7472
94.1475
99.4946
23.8423
648340364963333
100.0000
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.9719
93.8052
98.2411
42.7766
6481428647911688
75.8621
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
97.4514
96.5009
98.4209
44.2767
6481235723011668
58.6207
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.2173
94.9172
99.6315
23.5294
648034764892424
100.0000
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
47.4490
43.8282
51.7219
54.7342
64808305651860845189
85.2893
cchapple-customINDELD16_PLUS**
96.3496
95.5041
97.2102
62.8743
64793056725193158
81.8653
gduggal-bwavardSNPtvmap_l125_m0_e0*
92.0149
97.7077
86.9489
82.9272
6479152646997134
3.5015
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.2095
94.9026
99.6314
23.5322
647934864882424
100.0000
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_11to50het
97.5990
96.0558
99.1926
35.3810
64782666511536
11.3208
ltrigg-rtg1INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.1940
95.0822
99.4017
40.6176
647733564803939
100.0000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
66.4593
77.1439
58.3743
42.1879
64771919937266835135
76.8367
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.5241
97.2660
99.8150
78.5959
64751826476121
8.3333
jmaeng-gatkSNPtvmap_l100_m2_e0homalt
82.5067
70.2301
99.9845
69.8682
64712743647111
100.0000
rpoplin-dv42INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.1408
94.9941
99.3867
29.3238
647134164824039
97.5000
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.1401
94.7708
99.6309
23.4581
647035764792424
100.0000
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.0521
96.8708
99.2627
50.9309
647020964624845
93.7500
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.3002
94.7561
99.9846
24.3136
6469358647710
0.0000
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.3801
97.1609
99.6303
75.8203
64681896468244
16.6667
gduggal-bwaplatINDELI6_15*hetalt
85.2525
75.5818
97.7610
47.7759
646320886462148138
93.2432
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.4463
97.0858
99.8455
77.6924
64631946463100
0.0000
ckim-gatkSNPtvmap_l100_m2_e0homalt
82.4340
70.1324
99.9691
70.6315
64622752646220
0.0000
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_triTR_11to50*
97.3102
95.9453
98.7144
44.6603
646027368348978
87.6404
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.3477
97.0107
99.7221
77.9349
64581996459180
0.0000
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
76.6857
62.3443
99.5964
36.2241
6457390064162621
80.7692
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.9937
93.4578
98.6711
50.7411
645745264608783
95.4023
gduggal-bwaplatINDELI6_15HG002compoundhethetalt
85.9482
75.6238
99.5374
35.2988
6456208164553020
66.6667
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.0246
94.5657
99.6148
24.0847
645637164652525
100.0000
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
95.6924
96.0989
95.2894
42.1888
64542626453319300
94.0439
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.6973
94.5364
98.9593
25.4960
645437364666864
94.1176
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
70.3858
62.2960
80.8903
55.0300
64523905781418461272
68.9057
ltrigg-rtg1SNPtvmap_l125_m0_e0*
98.4887
97.3006
99.7063
64.1567
64521796450194
21.0526
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.4663
89.9219
99.4945
27.8754
645172364953328
84.8485
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
95.7409
93.7237
97.8469
79.8823
6451432645314216
11.2676
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.2112
93.3565
99.2459
50.4272
645045964494944
89.7959