PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
9301-9350 / 86044 show all
jpowers-varprowlSNP*map_l125_m0_e0homalt
98.5610
97.4523
99.6952
74.0600
654117165412011
55.0000
ckim-gatkSNPtvmap_l100_m2_e1homalt
82.5549
70.3075
99.9694
70.5594
65402762654020
0.0000
egarrison-hhgaINDELD1_5*hetalt
77.5745
63.8360
98.8480
70.3665
6540370561787264
88.8889
hfeng-pmm3INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.9479
95.9924
99.9847
32.9893
6539273655610
0.0000
ckim-dragenSNPtvmap_l125_m0_e0*
97.9625
98.6126
97.3210
77.9914
653992653918017
9.4444
ckim-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.7140
95.9777
99.5142
33.0521
653827465553232
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.8875
94.6157
99.2711
52.0847
653737265374843
89.5833
ckim-vqsrINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.7063
95.9630
99.5141
33.0555
653727565543232
100.0000
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
83.6741
97.8739
73.0725
38.0893
6537142694725602496
97.5000
ghariani-varprowlSNP*map_l125_m0_e0homalt
98.5153
97.3778
99.6797
71.5507
653617665362110
47.6190
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.4855
98.1673
98.8057
79.9095
653512265367933
41.7722
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
90.0230
88.4886
91.6115
43.8230
6534850116311065307
28.8263
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
67.6742
98.1523
51.6392
81.2351
653412366476225139
2.2329
egarrison-hhgaSNPtvmap_l125_m0_e0*
99.1050
98.5221
99.6948
73.4104
6533986533209
45.0000
anovak-vgSNP*map_l250_m2_e1*
75.2143
81.7954
69.6133
91.5868
6533145464812829654
23.1177
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.3545
94.8591
99.9847
25.8525
6532354654410
0.0000
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.0900
94.8591
99.4283
33.0075
653235466093838
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.8560
94.5289
99.3006
52.1150
653137865314641
89.1304
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.6017
95.6643
99.6192
25.0742
653129665402524
96.0000
cchapple-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
95.8456
0.0000
0.0000
6529283000
hfeng-pmm1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.9107
94.4420
99.5119
50.8251
652538465243225
78.1250
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
88.9998
98.0021
81.5123
84.1232
652413365651489141
9.4694
ciseli-customSNPtimap_l150_m2_e0homalt
87.0824
85.6618
88.5509
72.6120
652410926520843689
81.7319
anovak-vgINDEL*HG002compoundhethetalt
0.0000
25.9095
0.0000
0.0000
652418656000
rpoplin-dv42SNPtvmap_l125_m0_e0*
98.4900
98.3713
98.6090
73.3113
652310865229252
56.5217
jli-customSNPtvmap_l125_m0_e0*
98.7959
98.3713
99.2242
70.3527
652310865235118
35.2941
gduggal-bwaplatSNPtvmap_l125_m1_e0het
78.1031
64.4085
99.1939
89.8771
6522360465225313
24.5283
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.2968
97.9570
98.6388
79.3252
652113665229041
45.5556
gduggal-snapvardINDEL*map_siren*
85.9947
88.0027
84.0764
84.1625
652188973551393670
48.0976
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
70.3688
88.2855
58.4973
39.9312
6519865168561195910481
87.6411
egarrison-hhgaINDELD1_5HG002compoundhethetalt
77.6385
63.8117
99.1149
65.8609
6519369761595548
87.2727
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.5098
95.4885
99.6185
24.8854
651930865282524
96.0000
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
95.4885
0.0000
0.0000
6519308000
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.3478
97.8970
92.9280
84.6485
65171406557499142
28.4569
gduggal-bwafbSNPtvmap_l125_m0_e0*
98.0737
98.2808
97.8675
77.6619
6517114651714229
20.4225
jlack-gatkSNPtvmap_l125_m0_e0*
93.0649
98.2657
88.3869
84.2156
6516115651585654
6.3084
gduggal-snapplatSNP*map_l250_m2_e0*
87.8865
82.6252
93.8634
93.9104
651513706516426206
48.3568
gduggal-bwavardSNP*map_l125_m0_e0homalt
98.3897
97.0501
99.7668
70.8893
651419864171511
73.3333
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.8615
94.2539
99.6175
50.6158
651239765112520
80.0000
bgallagher-sentieonINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.5221
95.5960
99.5274
32.5866
651230065293131
100.0000
jmaeng-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.4991
95.5520
99.5272
33.1055
650930365263131
100.0000
mlin-fermikitSNP*map_l100_m0_e0homalt
62.9127
56.0069
71.7609
49.3097
65085112650825612415
94.2991
anovak-vgSNPtilowcmp_SimpleRepeat_quadTR_11to50het
95.4770
96.4561
94.5176
45.8743
65052396603383170
44.3864
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
96.8949
94.4670
99.4508
25.3587
650538165193636
100.0000
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.3292
95.2834
99.4647
22.7525
650532265043534
97.1429
ghariani-varprowlSNPtvmap_l125_m0_e0*
96.2771
98.0848
94.5349
81.3241
6504127650437668
18.0851
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.9978
94.1236
97.9483
47.9502
65034068593180169
93.8889
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.1241
94.4089
100.0000
25.3923
6501385651400
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
96.8780
94.3944
99.4959
25.6896
650038665133333
100.0000
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.5390
95.2102
99.9846
25.1466
6500327650910
0.0000