PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9251-9300 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.5688 | 98.7682 | 98.3702 | 77.3380 | 6575 | 82 | 6579 | 109 | 1 | 0.9174 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.9811 | 96.5062 | 99.5018 | 33.8856 | 6574 | 238 | 6591 | 33 | 32 | 96.9697 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 95.4545 | 0.0000 | 0.0000 | 6573 | 313 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l150_m2_e0 | het | 75.9484 | 90.6371 | 65.3567 | 81.6125 | 6573 | 679 | 6569 | 3482 | 815 | 23.4061 | |
| hfeng-pmm3 | SNP | tv | map_l125_m0_e0 | * | 99.1700 | 99.1102 | 99.2298 | 75.2152 | 6572 | 59 | 6571 | 51 | 7 | 13.7255 | |
| hfeng-pmm1 | INDEL | D16_PLUS | * | * | 97.5778 | 96.8750 | 98.2909 | 66.6166 | 6572 | 212 | 6556 | 114 | 68 | 59.6491 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.4325 | 88.9626 | 98.3752 | 33.8873 | 6569 | 815 | 6418 | 106 | 80 | 75.4717 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.2670 | 98.6631 | 99.8783 | 77.1278 | 6568 | 89 | 6568 | 8 | 5 | 62.5000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.3908 | 95.3819 | 99.4860 | 25.9321 | 6568 | 318 | 6581 | 34 | 33 | 97.0588 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.9355 | 96.4181 | 99.5014 | 33.6275 | 6568 | 244 | 6585 | 33 | 32 | 96.9697 | |
| ndellapenna-hhga | INDEL | D1_5 | * | hetalt | 77.7578 | 64.1093 | 98.7893 | 70.8854 | 6568 | 3677 | 6120 | 75 | 63 | 84.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.6291 | 95.3819 | 99.9848 | 25.9951 | 6568 | 318 | 6581 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | map_l125_m0_e0 | * | 98.7817 | 99.0499 | 98.5149 | 77.4668 | 6568 | 63 | 6567 | 99 | 13 | 13.1313 | |
| hfeng-pmm3 | INDEL | D16_PLUS | * | * | 97.6998 | 96.8013 | 98.6151 | 66.5273 | 6567 | 217 | 6551 | 92 | 69 | 75.0000 | |
| jlack-gatk | SNP | * | map_l125_m0_e0 | homalt | 98.7740 | 97.8248 | 99.7418 | 68.3464 | 6566 | 146 | 6566 | 17 | 12 | 70.5882 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.3823 | 95.3945 | 99.4547 | 79.4362 | 6566 | 317 | 6566 | 36 | 9 | 25.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 92.1673 | 95.3799 | 89.1641 | 87.4464 | 6565 | 318 | 6443 | 783 | 169 | 21.5837 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.4553 | 98.6030 | 92.5025 | 84.0183 | 6564 | 93 | 6576 | 533 | 65 | 12.1951 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 81.4493 | 100.0000 | 6564 | 1495 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 81.4493 | 100.0000 | 6564 | 1495 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 89.5484 | 81.0747 | 100.0000 | 93.6170 | 6563 | 1532 | 3 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.3589 | 97.3161 | 99.4242 | 37.2504 | 6563 | 181 | 6562 | 38 | 5 | 13.1579 | |
| asubramanian-gatk | SNP | ti | map_l125_m2_e0 | het | 51.5556 | 34.7637 | 99.7264 | 92.2284 | 6562 | 12314 | 6560 | 18 | 6 | 33.3333 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.3586 | 98.2333 | 98.4842 | 57.4113 | 6561 | 118 | 6562 | 101 | 80 | 79.2079 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.3473 | 97.2572 | 99.4621 | 37.7380 | 6560 | 185 | 6472 | 35 | 18 | 51.4286 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 83.0167 | 98.2183 | 71.8900 | 39.0410 | 6560 | 119 | 6900 | 2698 | 2648 | 98.1468 | |
| hfeng-pmm1 | SNP | tv | map_l125_m0_e0 | * | 99.1084 | 98.9142 | 99.3035 | 75.2093 | 6559 | 72 | 6558 | 46 | 13 | 28.2609 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.4660 | 95.2782 | 99.7566 | 78.6987 | 6558 | 325 | 6558 | 16 | 4 | 25.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.9813 | 98.1884 | 99.7871 | 45.7254 | 6558 | 121 | 6563 | 14 | 11 | 78.5714 | |
| dgrover-gatk | SNP | tv | map_l125_m0_e0 | * | 98.7276 | 98.8840 | 98.5716 | 78.3574 | 6557 | 74 | 6556 | 95 | 18 | 18.9474 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.2189 | 98.4978 | 90.2963 | 84.2175 | 6557 | 100 | 6216 | 668 | 71 | 10.6287 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.9536 | 94.8907 | 99.1081 | 52.4443 | 6556 | 353 | 6556 | 59 | 54 | 91.5254 | |
| raldana-dualsentieon | INDEL | D16_PLUS | * | * | 97.3178 | 96.6244 | 98.0213 | 67.0307 | 6555 | 229 | 6539 | 132 | 101 | 76.5152 | |
| hfeng-pmm2 | INDEL | D16_PLUS | * | * | 97.4049 | 96.6244 | 98.1982 | 67.4168 | 6555 | 229 | 6540 | 120 | 70 | 58.3333 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.5229 | 95.1931 | 99.9696 | 26.4607 | 6555 | 331 | 6568 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | * | * | 96.9778 | 96.5949 | 97.3637 | 71.3383 | 6553 | 231 | 6537 | 177 | 130 | 73.4463 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | homalt | 82.6342 | 70.4150 | 99.9847 | 69.7916 | 6550 | 2752 | 6550 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.0941 | 94.7894 | 99.5137 | 51.5749 | 6549 | 360 | 6548 | 32 | 28 | 87.5000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 84.0742 | 97.1085 | 74.1248 | 53.6075 | 6549 | 195 | 6606 | 2306 | 39 | 1.6912 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.4351 | 94.7749 | 98.1545 | 42.9464 | 6548 | 361 | 6542 | 123 | 88 | 71.5447 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.0017 | 96.1098 | 99.9695 | 34.1855 | 6547 | 265 | 6563 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | * | * | 96.2606 | 96.5065 | 96.0159 | 70.3319 | 6547 | 237 | 6531 | 271 | 163 | 60.1476 | |
| raldana-dualsentieon | SNP | tv | map_l125_m0_e0 | * | 98.7925 | 98.7181 | 98.8671 | 74.3082 | 6546 | 85 | 6545 | 75 | 3 | 4.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | HG002compoundhet | hetalt | 77.8263 | 64.0760 | 99.0905 | 66.4524 | 6546 | 3670 | 6101 | 56 | 47 | 83.9286 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.2945 | 95.0894 | 99.6044 | 78.8532 | 6545 | 338 | 6546 | 26 | 3 | 11.5385 | |
| anovak-vg | INDEL | * | * | hetalt | 0.0000 | 25.9341 | 0.0000 | 0.0000 | 6545 | 18692 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l100_m0_e0 | het | 78.7491 | 90.6120 | 69.6328 | 77.9564 | 6544 | 678 | 6542 | 2853 | 767 | 26.8840 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.9093 | 94.7026 | 99.2213 | 43.0691 | 6543 | 366 | 6626 | 52 | 48 | 92.3077 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.8899 | 94.7026 | 99.1807 | 52.6407 | 6543 | 366 | 6537 | 54 | 52 | 96.2963 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.1200 | 95.0044 | 99.3320 | 25.8972 | 6542 | 344 | 6543 | 44 | 43 | 97.7273 | |