PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
9001-9050 / 86044 show all
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
86.6457
91.9827
81.8942
39.7431
6792592676214951459
97.5920
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.0365
94.6613
99.5340
28.2145
679138368353230
93.7500
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
93.4033
98.6198
88.7109
85.7951
678895681386796
11.0727
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
91.7238
98.6053
85.7401
86.4136
6787966163102559
5.7561
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
83.3771
73.0169
97.1633
50.4684
678425076782198196
98.9899
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
83.3771
73.0169
97.1633
50.4684
678425076782198196
98.9899
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.9150
98.5617
95.3224
87.1181
678499688833849
14.4970
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.9771
94.5358
99.5479
27.9803
678239268263130
96.7742
gduggal-snapplatSNPtimap_l150_m0_e0*
90.2459
86.2613
94.6165
87.8341
678110806784386225
58.2902
jmaeng-gatkSNP*map_l150_m2_e1homalt
72.8475
57.3011
99.9705
80.8330
67775050677722
100.0000
ndellapenna-hhgaSNPtvmap_l150_m1_e0het
98.5385
97.5525
99.5446
72.4747
677617067763113
41.9355
gduggal-snapfbSNPtvmap_l150_m1_e0het
95.6989
97.3798
94.0751
75.4297
67641826764426173
40.6103
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
98.1064
96.3243
99.9558
58.4821
6761258678631
33.3333
gduggal-snapvardSNPtvmap_l150_m1_e0het
88.3469
97.2934
80.9072
84.0922
67581886742159194
5.9082
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.8070
94.2013
99.5609
27.3655
675841668023030
100.0000
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.7996
94.1873
99.5608
27.3684
675741768013030
100.0000
ckim-gatkSNP*map_l150_m2_e1homalt
72.6891
57.1151
99.9408
81.5997
67555072675542
50.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
90.5907
83.7697
98.6209
32.2653
67511308715110087
87.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
90.5907
83.7697
98.6209
32.2653
67511308715110087
87.0000
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.9337
94.0758
99.9706
28.2016
6749425679321
50.0000
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
98.6210
97.6408
99.6211
50.6118
674616368362612
46.1538
hfeng-pmm2SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9852
100.0000
99.9704
37.6087
67450674522
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.8422
97.9805
99.7191
81.0931
674413967441910
52.6316
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9852
99.9852
99.9852
34.3808
67441674411
100.0000
hfeng-pmm1SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9703
99.9703
99.9703
36.7854
67432674322
100.0000
cchapple-customSNPtvmap_l150_m1_e0het
95.1002
97.0775
93.2019
81.0524
6743203675949381
16.4300
dgrover-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9629
99.9555
99.9703
35.4085
67423674222
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9629
99.9555
99.9703
35.1476
67423674222
100.0000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8741
99.9407
99.8075
37.7626
674146741135
38.4615
ckim-dragenSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9481
99.9259
99.9703
34.6642
67405674022
100.0000
jlack-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9333
99.9259
99.9407
34.6955
67405674043
75.0000
hfeng-pmm3SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9407
99.9259
99.9555
36.4048
67405674033
100.0000
jli-customSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.3587
99.9407
98.7835
42.3002
674046740831
1.2048
jli-customSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9407
99.9110
99.9703
35.3939
67396673922
100.0000
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9481
99.9110
99.9851
30.4766
67396672411
100.0000
ltrigg-rtg1SNPtvmap_l150_m1_e0het
98.3075
97.0055
99.6450
62.4882
67382086736244
16.6667
jpowers-varprowlSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.3156
99.8517
96.8261
47.4887
6735106742221131
59.2760
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9258
99.8517
100.0000
35.0718
673510673500
gduggal-snapplatSNPtvmap_l150_m2_e1het
92.0469
91.6576
92.4396
88.3528
67356136737551289
52.4501
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.1461
99.8517
98.4503
43.0996
67341067341061
0.9434
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.8665
99.8517
99.8813
39.6598
673410673282
25.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.3508
99.8517
98.8550
44.7482
6734106734781
1.2821
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.0467
94.6710
99.5447
27.5976
673337967773130
96.7742
gduggal-snapplatSNPtimap_l150_m2_e1homalt
93.2871
87.5211
99.8663
73.9142
6733960672499
100.0000
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.8082
93.8528
99.9557
28.4115
6733441677532
66.6667
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
93.8389
0.0000
0.0000
6732442000
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8441
99.8073
99.8810
33.7603
673213671481
12.5000
ghariani-varprowlSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.4008
99.8073
97.0334
44.7618
6732136738206131
63.5922
ckim-dragenSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.6674
99.7924
99.5426
42.2165
6730146747312
6.4516
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.4328
99.7924
99.0758
46.4998
6730146754636
9.5238