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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
851-900 / 86044 show all
gduggal-snapvardSNPtvHG002complexvarhomalt
98.0989
96.4652
99.7889
20.7946
9174933628934818993
49.2063
ckim-vqsrSNPtvHG002complexvarhomalt
98.0771
96.2349
99.9913
23.4384
9153035819151686
75.0000
asubramanian-gatkSNPtvHG002complexvarhomalt
97.9093
95.9142
99.9890
23.2773
91225388691211108
80.0000
gduggal-bwaplatSNPtvHG002complexvarhomalt
97.7875
95.7534
99.9100
24.5806
910724039909998277
93.9024
ckim-gatkSNPtimap_siren*
94.6168
90.5675
99.0452
64.7326
9088994669087487696
10.9589
jmaeng-gatkSNPtimap_siren*
94.5677
90.5256
98.9876
65.0046
9084795089083292992
9.9031
eyeh-varpipeSNP*map_sirenhet
98.0835
99.7637
96.4589
61.2396
9077621587713322051
1.5839
anovak-vgSNPtimap_siren*
88.3716
90.3532
86.4749
58.5181
90674968189812140473559
25.3364
bgallagher-sentieonSNP*map_sirenhet
99.4455
99.6483
99.2436
58.2943
906713209065769177
11.1433
dgrover-gatkSNP*map_sirenhet
99.5699
99.6197
99.5201
59.7603
906453469063143777
17.6201
asubramanian-gatkSNP*map_siren*
76.4845
61.9738
99.8677
70.7590
90623556059060512035
29.1667
hfeng-pmm3SNP*map_sirenhet
99.6837
99.5824
99.7852
54.5786
906113809059719518
9.2308
hfeng-pmm2SNP*map_sirenhet
99.5406
99.5406
99.5405
57.6094
905734189055941833
7.8947
ckim-dragenSNP*map_sirenhet
98.5668
99.4945
97.6562
62.5377
90531460905412173189
8.6977
jli-customSNP*map_sirenhet
99.5222
99.4681
99.5764
53.8949
905074849050138576
19.7403
jlack-gatkSNP*map_sirenhet
97.0812
99.4593
94.8142
68.9379
90499492904854949324
6.5468
raldana-dualsentieonSNP*map_sirenhet
99.3673
99.4219
99.3127
56.6962
904655269045162610
1.5974
rpoplin-dv42SNP*map_sirenhet
99.5263
99.4010
99.6518
54.9841
9044654590433316159
50.3165
ghariani-varprowlSNP*map_sirenhet
98.3861
99.3911
97.4013
64.9618
90437554904402413303
12.5570
hfeng-pmm1SNP*map_sirenhet
99.5907
99.3571
99.8255
53.5727
904065859039215838
24.0506
gduggal-bwafbSNP*map_sirenhet
98.9549
99.3230
98.5895
60.8677
90375616903791293200
15.4679
qzeng-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
95.6668
95.6114
95.7223
68.1753
90304414514827166263965
59.8400
egarrison-hhgaSNP*map_sirenhet
99.5365
99.2384
99.8364
54.0342
902986939029914853
35.8108
ltrigg-rtg1SNP*map_sirenhet
99.2561
98.9032
99.6115
48.6936
899929988999635116
4.5584
ndellapenna-hhgaSNP*map_sirenhet
99.3524
98.8878
99.8214
53.1990
8997910128998016158
36.0248
gduggal-snapfbSNP*map_sirenhet
98.1134
98.8438
97.3936
60.3479
899391052899422407760
31.5746
ltrigg-rtg2SNP*map_sirenhet
99.2163
98.7812
99.6552
46.0328
8988111098988731115
4.8232
cchapple-customSNP*map_sirenhet
97.7546
98.5944
96.9290
63.2688
897121279898262846543
19.0794
ciseli-customSNPtimap_siren*
90.7989
89.0429
92.6255
57.4504
89359109968907770922003
28.2431
astatham-gatkSNPtimap_siren*
94.0656
88.8705
99.9059
56.9785
8918611169891718446
54.7619
jpowers-varprowlSNP*map_sirenhet
98.0429
97.8328
98.2539
63.2948
890191972890211582312
19.7219
gduggal-bwafbINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
95.5779
93.7628
97.4647
70.7003
8855858919453124592226
90.5246
gduggal-bwavardSNP*map_sirenhet
96.2598
97.0810
95.4524
69.7950
883352656872334156368
8.8547
gduggal-snapvardSNP*map_sirenhet
95.1967
96.5469
93.8838
69.6200
878493142867435651524
9.2727
egarrison-hhgaINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
93.2879
92.8692
93.7104
80.9504
8771467358818959195201
87.8696
ndellapenna-hhgaINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
93.2288
92.7559
93.7066
80.9569
8760768428825159275106
86.1481
gduggal-snapplatSNP*map_sirenhet
96.5899
96.2777
96.9043
72.4626
8760433878771028021309
46.7166
ckim-gatkINDELD1_5*het
99.6268
99.8162
99.4381
60.7761
8741316187419494126
25.5061
bgallagher-sentieonINDELD1_5*het
99.7512
99.8059
99.6966
58.6998
8740417087413266136
51.1278
dgrover-gatkINDELD1_5*het
99.7614
99.7979
99.7250
59.4296
8739717787406241125
51.8672
ckim-dragenINDELD1_5*het
99.5957
99.7625
99.4294
59.4097
873662088730850164
12.7745
jli-customINDELD1_5*het
99.7840
99.7088
99.8593
56.7542
873192558731312365
52.8455
rpoplin-dv42INDELD1_5*het
99.5696
99.7077
99.4320
57.4420
8731825687348499434
86.9739
jmaeng-gatkINDELD1_5*het
99.4941
99.6997
99.2893
60.9724
8731126387316625129
20.6400
ckim-vqsrINDELD1_5*het
99.6940
99.6963
99.6917
60.8657
8730826687313270118
43.7037
astatham-gatkINDELD1_5*het
99.6974
99.6803
99.7145
58.9760
8729428087301250122
48.8000
jlack-gatkINDELD1_5*het
99.1283
99.6506
98.6115
59.9642
87268306872811229246
20.0163
qzeng-customSNPtimap_siren*
92.5421
86.8188
99.0732
61.8902
871271322886370808570
70.5446
ltrigg-rtg2INDELD1_5*het
99.5293
99.4473
99.6114
53.9225
870904848688933971
20.9440
ckim-isaacINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
94.4269
92.1672
96.8002
61.2699
8705173988636828552059
72.1191