PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
8751-8800 / 86044 show all
gduggal-snapfbSNPtvmap_l150_m2_e1het
95.8395
97.4959
94.2384
77.2735
71641847164438174
39.7260
asubramanian-gatkSNPtiHG002compoundhethomalt
98.3931
96.8894
99.9442
30.6032
7164230716443
75.0000
ckim-gatkSNP*map_l100_m0_e0homalt
76.2549
61.6437
99.9442
71.4939
71634457716342
50.0000
hfeng-pmm1SNPtvmap_l150_m2_e0het
99.1075
98.7728
99.4445
75.8631
71638971614010
25.0000
hfeng-pmm2SNPtvmap_l100_m0_e0het
98.8749
99.1831
98.5687
74.1359
716359716210411
10.5769
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
86.7364
78.3970
97.0612
92.7953
71601973716721734
15.6682
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
86.7364
78.3970
97.0612
92.7953
71601973716721734
15.6682
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.2372
98.7305
99.7490
37.0877
71559271541818
100.0000
ghariani-varprowlSNPtvmap_l100_m0_e0het
96.3501
99.0446
93.7983
79.0409
715369715447376
16.0677
ckim-dragenSNPtvmap_l150_m2_e0het
97.5182
98.6211
96.4396
82.0747
7152100715126417
6.4394
anovak-vgSNP*lowcmp_SimpleRepeat_triTR_11to50*
97.2834
97.2128
97.3541
36.0909
71502057175195109
55.8974
gduggal-snapvardSNPtvmap_l150_m2_e1het
88.7208
97.3054
81.5281
85.1064
71501987128161597
6.0062
ciseli-customSNPtvmap_l125_m2_e0het
74.6164
68.4639
81.9839
81.7497
714932937149157162
3.9465
hfeng-pmm1SNPtvmap_l100_m0_e0het
99.2295
98.9754
99.4850
70.4702
71487471473711
29.7297
jlack-gatkSNPtvmap_l100_m0_e0het
91.9563
98.9477
85.8877
83.2329
7146767145117461
5.1959
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
60.2556
85.1120
46.6359
49.9659
71461250718182178174
99.4767
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
90.1687
84.9804
96.0316
53.5294
714612637163296207
69.9324
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
89.5893
84.9685
94.7416
48.7318
7145126413711761716
94.0867
gduggal-snapvardSNP*lowcmp_SimpleRepeat_triTR_11to50*
96.3550
97.1312
95.5910
44.3893
7144211706832614
4.2945
cchapple-customSNPtvmap_l150_m2_e1het
95.2289
97.2237
93.3142
82.3755
7144204716051383
16.1793
raldana-dualsentieonSNPtvmap_l100_m0_e0het
98.8033
98.8923
98.7144
71.7057
7142807141931
1.0753
jli-customSNPtvmap_l150_m2_e0het
98.7416
98.4694
99.0154
74.3882
714111171407119
26.7606
gduggal-bwavardSNPtimap_l150_m1_e0homalt
98.6247
97.4478
99.8303
71.2444
71401877059129
75.0000
hfeng-pmm3SNP*map_l250_m1_e0*
98.9535
98.8507
99.0565
88.1658
7139837139689
13.2353
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
78.7301
78.1671
79.3012
91.5881
713919947172187298
5.2350
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
78.7301
78.1671
79.3012
91.5881
713919947172187298
5.2350
rpoplin-dv42SNPtvmap_l100_m0_e0het
98.5640
98.8507
98.2789
68.7061
713983713812550
40.0000
ltrigg-rtg1SNPtvmap_l150_m2_e1het
98.3805
97.1421
99.6509
65.0308
71382107136254
16.0000
gduggal-bwafbSNPtvmap_l150_m2_e0het
97.9956
98.4280
97.5670
79.8007
7138114713817833
18.5393
egarrison-hhgaSNPtvmap_l150_m2_e0het
99.0356
98.4142
99.6649
74.5802
71371157137249
37.5000
hfeng-pmm2SNP*map_l250_m1_e0*
98.5497
98.7953
98.3053
89.3707
713587713512315
12.1951
gduggal-bwavardSNPtvmap_l150_m2_e0het
91.7382
98.3591
85.9524
85.7991
71331197116116344
3.7833
bgallagher-sentieonSNP*map_l250_m1_e0*
98.3858
98.7400
98.0341
88.9251
713191713114331
21.6783
ckim-dragenSNPtvmap_l100_m0_e0het
97.5576
98.6846
96.4561
76.6502
712795713126221
8.0153
astatham-gatkINDEL*map_siren*
97.4708
96.1673
98.8100
83.5327
712628471418620
23.2558
hfeng-pmm1SNP*map_l250_m1_e0*
98.8139
98.6292
98.9993
88.0247
71239971237216
22.2222
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
93.4068
87.9802
99.5467
30.4101
712297321961010
100.0000
mlin-fermikitINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
72.4419
70.6939
74.2785
64.5876
71212952702624332324
95.5199
gduggal-bwafbSNPtvmap_l100_m0_e0het
97.9160
98.5600
97.2803
74.2359
7118104711819934
17.0854
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.0810
98.2062
99.9717
26.1765
7117130705722
100.0000
egarrison-hhgaSNPtvmap_l100_m0_e0het
99.0740
98.5184
99.6359
68.9508
711510771152610
38.4615
jli-customSNPtvmap_l100_m0_e0het
98.7783
98.5184
99.0395
66.6140
711510771156920
28.9855
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
93.3436
96.3164
90.5489
40.3596
71122726879718641
89.2758
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
62.6517
96.2893
46.4314
47.0193
7110274714382418121
98.5439
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
83.9960
76.5257
93.0825
45.8976
711021812449182112
61.5385
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
83.9960
76.5257
93.0825
45.8976
711021812449182112
61.5385
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
92.5582
86.9571
98.9306
27.1355
7107106673087975
94.9367
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.6745
96.2080
99.1864
53.3595
710428070715853
91.3793
dgrover-gatkSNP*map_l250_m1_e0*
98.3434
98.2276
98.4594
89.8378
7094128709411129
26.1261
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
94.5664
97.8336
91.5103
35.6834
70901577071656646
98.4756