PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8701-8750 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 85.3804 | 75.9374 | 97.5054 | 58.4142 | 7230 | 2291 | 7231 | 185 | 160 | 86.4865 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e1 | het | 91.8305 | 98.3805 | 86.0982 | 85.8449 | 7229 | 119 | 7209 | 1164 | 45 | 3.8660 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6691 | 99.7378 | 99.6004 | 35.1764 | 7228 | 19 | 7228 | 29 | 28 | 96.5517 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.1720 | 99.7378 | 98.6126 | 26.3903 | 7228 | 19 | 7179 | 101 | 98 | 97.0297 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.5338 | 99.7378 | 97.3585 | 36.6570 | 7228 | 19 | 7224 | 196 | 195 | 99.4898 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6415 | 99.7240 | 99.5592 | 34.7388 | 7227 | 20 | 7227 | 32 | 32 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_siren | * | 98.2573 | 97.5304 | 98.9952 | 77.5300 | 7227 | 183 | 7192 | 73 | 11 | 15.0685 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.0691 | 97.8061 | 98.3336 | 59.4584 | 7222 | 162 | 7199 | 122 | 98 | 80.3279 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e0 | homalt | 97.1871 | 94.8136 | 99.6825 | 79.8291 | 7221 | 395 | 7222 | 23 | 14 | 60.8696 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 84.1727 | 99.6274 | 72.8688 | 27.5370 | 7220 | 27 | 7394 | 2753 | 2746 | 99.7457 | |
| mlin-fermikit | SNP | * | map_l150_m1_e0 | het | 54.1179 | 37.3680 | 98.0827 | 65.3701 | 7218 | 12098 | 7213 | 141 | 5 | 3.5461 | |
| ckim-isaac | SNP | ti | map_l125_m0_e0 | * | 72.1772 | 56.5507 | 99.7374 | 74.7461 | 7217 | 5545 | 7217 | 19 | 4 | 21.0526 | |
| ltrigg-rtg1 | SNP | ti | HG002compoundhet | homalt | 98.7135 | 97.5656 | 99.8888 | 29.2249 | 7214 | 180 | 7187 | 8 | 7 | 87.5000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5103 | 99.5446 | 99.4760 | 35.3827 | 7214 | 33 | 7214 | 38 | 38 | 100.0000 | |
| ckim-vqsr | INDEL | * | map_siren | * | 97.9969 | 97.3279 | 98.6752 | 85.5636 | 7212 | 198 | 7225 | 97 | 19 | 19.5876 | |
| ckim-gatk | SNP | ti | map_l125_m2_e0 | homalt | 77.6462 | 63.4883 | 99.9307 | 75.7176 | 7211 | 4147 | 7211 | 5 | 4 | 80.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 43.8569 | 39.4929 | 49.3052 | 41.4961 | 7211 | 11048 | 7203 | 7406 | 7360 | 99.3789 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.9716 | 99.4894 | 98.4590 | 36.7681 | 7210 | 37 | 7220 | 113 | 103 | 91.1504 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 83.0202 | 97.6165 | 72.2212 | 39.7852 | 7208 | 176 | 7693 | 2959 | 2890 | 97.6681 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 93.3626 | 97.9878 | 89.1544 | 38.6200 | 7207 | 148 | 7201 | 876 | 61 | 6.9635 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.6112 | 97.5894 | 99.6546 | 48.0405 | 7206 | 178 | 7214 | 25 | 15 | 60.0000 | |
| bgallagher-sentieon | SNP | tv | map_l150_m2_e0 | het | 98.6238 | 99.3381 | 97.9198 | 79.8967 | 7204 | 48 | 7202 | 153 | 20 | 13.0719 | |
| anovak-vg | SNP | ti | map_l125_m0_e0 | het | 76.2921 | 87.1596 | 67.8342 | 82.4188 | 7202 | 1061 | 7166 | 3398 | 912 | 26.8393 | |
| ckim-vqsr | SNP | ti | HG002compoundhet | homalt | 98.6436 | 97.3763 | 99.9445 | 31.0556 | 7200 | 194 | 7200 | 4 | 4 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l150_m1_e0 | homalt | 99.0574 | 98.2530 | 99.8751 | 68.9978 | 7199 | 128 | 7199 | 9 | 7 | 77.7778 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.4992 | 99.3239 | 93.8307 | 37.7780 | 7198 | 49 | 7194 | 473 | 470 | 99.3658 | |
| eyeh-varpipe | SNP | tv | map_l100_m0_e0 | het | 94.2875 | 99.6677 | 89.4585 | 75.0937 | 7198 | 24 | 7137 | 841 | 11 | 1.3080 | |
| jmaeng-gatk | SNP | * | map_l100_m0_e0 | homalt | 76.4825 | 61.9363 | 99.9583 | 70.3301 | 7197 | 4423 | 7197 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | SNP | ti | map_l150_m1_e0 | homalt | 99.0024 | 98.1984 | 99.8196 | 73.5826 | 7195 | 132 | 7195 | 13 | 10 | 76.9231 | |
| dgrover-gatk | SNP | tv | map_l150_m2_e0 | het | 98.8320 | 99.2002 | 98.4666 | 81.2986 | 7194 | 58 | 7192 | 112 | 20 | 17.8571 | |
| ghariani-varprowl | SNP | ti | map_l150_m1_e0 | homalt | 98.9885 | 98.1711 | 99.8196 | 71.5110 | 7193 | 134 | 7193 | 13 | 10 | 76.9231 | |
| hfeng-pmm3 | SNP | tv | map_l150_m2_e0 | het | 99.2203 | 99.1589 | 99.2819 | 76.4022 | 7191 | 61 | 7189 | 52 | 5 | 9.6154 | |
| hfeng-pmm2 | SNP | tv | map_l150_m2_e0 | het | 98.7968 | 99.0899 | 98.5054 | 79.5966 | 7186 | 66 | 7184 | 109 | 10 | 9.1743 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.1429 | 97.6886 | 98.6014 | 32.5284 | 7185 | 170 | 7191 | 102 | 76 | 74.5098 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 93.3120 | 87.8747 | 99.4664 | 36.3431 | 7182 | 991 | 2237 | 12 | 12 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m1_e0 | * | 98.8785 | 99.4323 | 98.3308 | 90.1611 | 7181 | 41 | 7010 | 119 | 12 | 10.0840 | |
| ltrigg-rtg1 | INDEL | * | map_siren | * | 97.9785 | 96.9096 | 99.0713 | 78.1949 | 7181 | 229 | 7147 | 67 | 16 | 23.8806 | |
| asubramanian-gatk | SNP | ti | map_l100_m1_e0 | homalt | 57.1201 | 39.9777 | 100.0000 | 77.0416 | 7180 | 10780 | 7180 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l100_m0_e0 | het | 98.6394 | 99.3908 | 97.8993 | 74.3366 | 7178 | 44 | 7177 | 154 | 21 | 13.6364 | |
| ghariani-varprowl | SNP | tv | map_l150_m2_e0 | het | 96.2824 | 98.9244 | 93.7778 | 83.5770 | 7174 | 78 | 7174 | 476 | 75 | 15.7563 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 59.8797 | 85.7519 | 46.0008 | 48.3317 | 7174 | 1192 | 7166 | 8412 | 7803 | 92.7603 | |
| ndellapenna-hhga | SNP | tv | map_l150_m2_e1 | het | 98.5776 | 97.6184 | 99.5559 | 73.8732 | 7173 | 175 | 7173 | 32 | 13 | 40.6250 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.4520 | 98.9651 | 99.9438 | 27.8836 | 7172 | 75 | 7111 | 4 | 4 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l150_m2_e0 | het | 92.1348 | 98.8831 | 86.2488 | 87.0469 | 7171 | 81 | 7169 | 1143 | 59 | 5.1619 | |
| dgrover-gatk | SNP | tv | map_l100_m0_e0 | het | 98.8895 | 99.2661 | 98.5157 | 76.1747 | 7169 | 53 | 7168 | 108 | 20 | 18.5185 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e0 | het | 98.7872 | 98.8555 | 98.7190 | 75.1931 | 7169 | 83 | 7167 | 93 | 49 | 52.6882 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.2001 | 97.4711 | 98.9400 | 41.0943 | 7169 | 186 | 7094 | 76 | 20 | 26.3158 | |
| hfeng-pmm3 | SNP | tv | map_l100_m0_e0 | het | 99.3072 | 99.2523 | 99.3623 | 70.7621 | 7168 | 54 | 7167 | 46 | 4 | 8.6957 | |
| raldana-dualsentieon | SNP | tv | map_l150_m2_e0 | het | 98.6373 | 98.8279 | 98.4474 | 78.1985 | 7167 | 85 | 7165 | 113 | 1 | 0.8850 | |
| ckim-vqsr | SNP | tv | map_l125_m2_e0 | het | 80.8052 | 68.6171 | 98.2581 | 89.8954 | 7165 | 3277 | 7164 | 127 | 1 | 0.7874 | |