PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8651-8700 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7867 | 98.9531 | 98.6209 | 43.1645 | 7278 | 77 | 7294 | 102 | 43 | 42.1569 | |
| mlin-fermikit | SNP | ti | HG002compoundhet | homalt | 93.7665 | 98.4176 | 89.5352 | 35.5677 | 7277 | 117 | 7281 | 851 | 725 | 85.1939 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.6297 | 90.2717 | 99.4297 | 29.8103 | 7275 | 784 | 7323 | 42 | 36 | 85.7143 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.6297 | 90.2717 | 99.4297 | 29.8103 | 7275 | 784 | 7323 | 42 | 36 | 85.7143 | |
| dgrover-gatk | SNP | ti | map_l150_m1_e0 | homalt | 99.5618 | 99.2357 | 99.8901 | 68.6615 | 7271 | 56 | 7271 | 8 | 6 | 75.0000 | |
| ghariani-varprowl | SNP | tv | map_l150_m2_e1 | het | 96.2978 | 98.9385 | 93.7943 | 83.6297 | 7270 | 78 | 7270 | 481 | 75 | 15.5925 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 44.4394 | 41.1352 | 48.3208 | 59.7393 | 7269 | 10402 | 7223 | 7725 | 7546 | 97.6828 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 44.4394 | 41.1352 | 48.3208 | 59.7393 | 7269 | 10402 | 7223 | 7725 | 7546 | 97.6828 | |
| rpoplin-dv42 | INDEL | * | map_siren | * | 98.4035 | 98.0972 | 98.7117 | 97.1910 | 7269 | 141 | 7279 | 95 | 49 | 51.5789 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 87.2844 | 97.5309 | 78.9862 | 44.6999 | 7268 | 184 | 7277 | 1936 | 72 | 3.7190 | |
| jlack-gatk | SNP | tv | map_l150_m2_e1 | het | 92.1722 | 98.8977 | 86.3032 | 87.0729 | 7267 | 81 | 7265 | 1153 | 60 | 5.2038 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e1 | het | 98.8030 | 98.8704 | 98.7357 | 75.2106 | 7265 | 83 | 7263 | 93 | 49 | 52.6882 | |
| raldana-dualsentieon | SNP | tv | map_l150_m2_e1 | het | 98.6349 | 98.8432 | 98.4275 | 78.2306 | 7263 | 85 | 7261 | 116 | 1 | 0.8621 | |
| ckim-dragen | SNP | ti | map_l150_m1_e0 | homalt | 99.4455 | 99.1129 | 99.7803 | 65.1947 | 7262 | 65 | 7267 | 16 | 15 | 93.7500 | |
| rpoplin-dv42 | SNP | ti | map_l150_m1_e0 | homalt | 99.3702 | 99.0583 | 99.6841 | 71.0853 | 7258 | 69 | 7258 | 23 | 22 | 95.6522 | |
| hfeng-pmm1 | SNP | tv | map_l150_m2_e1 | het | 99.1123 | 98.7752 | 99.4518 | 75.8770 | 7258 | 90 | 7256 | 40 | 10 | 25.0000 | |
| ckim-vqsr | SNP | tv | map_l125_m2_e1 | het | 80.9165 | 68.7672 | 98.2798 | 89.9018 | 7257 | 3296 | 7256 | 127 | 1 | 0.7874 | |
| gduggal-snapplat | INDEL | I6_15 | * | * | 41.4207 | 29.2310 | 71.0492 | 57.1777 | 7256 | 17567 | 7117 | 2900 | 649 | 22.3793 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 94.3059 | 89.5985 | 99.5353 | 25.4660 | 7253 | 842 | 7283 | 34 | 30 | 88.2353 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.7152 | 97.3162 | 96.1216 | 41.6514 | 7252 | 200 | 7336 | 296 | 141 | 47.6351 | |
| asubramanian-gatk | SNP | ti | segdup | homalt | 98.2382 | 96.5889 | 99.9449 | 87.7431 | 7249 | 256 | 7249 | 4 | 4 | 100.0000 | |
| ckim-isaac | SNP | ti | segdup | homalt | 98.2649 | 96.5889 | 100.0000 | 84.6188 | 7249 | 256 | 7249 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l150_m1_e0 | homalt | 99.3830 | 98.9218 | 99.8485 | 72.6540 | 7248 | 79 | 7248 | 11 | 6 | 54.5455 | |
| anovak-vg | SNP | ti | HG002compoundhet | het | 76.5771 | 76.2336 | 76.9238 | 40.2064 | 7246 | 2259 | 8247 | 2474 | 2044 | 82.6192 | |
| ckim-dragen | SNP | tv | map_l150_m2_e1 | het | 97.5102 | 98.6119 | 96.4328 | 82.1323 | 7246 | 102 | 7245 | 268 | 17 | 6.3433 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 92.2388 | 86.5886 | 98.6779 | 34.8864 | 7244 | 1122 | 7240 | 97 | 80 | 82.4742 | |
| egarrison-hhga | INDEL | * | map_siren | * | 97.8660 | 97.7598 | 97.9724 | 96.4159 | 7244 | 166 | 7248 | 150 | 78 | 52.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 48.3943 | 45.1362 | 52.1594 | 60.4503 | 7243 | 8804 | 7210 | 6613 | 6501 | 98.3064 | |
| ciseli-custom | SNP | tv | map_l125_m2_e1 | het | 74.7394 | 68.6345 | 82.0365 | 81.7503 | 7243 | 3310 | 7243 | 1586 | 64 | 4.0353 | |
| qzeng-custom | SNP | tv | map_l100_m2_e0 | homalt | 87.6918 | 78.6086 | 99.1482 | 62.9624 | 7243 | 1971 | 7217 | 62 | 61 | 98.3871 | |
| astatham-gatk | SNP | ti | map_l150_m1_e0 | homalt | 99.3483 | 98.8263 | 99.8759 | 68.2477 | 7241 | 86 | 7241 | 9 | 8 | 88.8889 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 93.8195 | 97.1685 | 90.6935 | 51.4915 | 7241 | 211 | 7153 | 734 | 47 | 6.4033 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2190 | 99.9172 | 98.5304 | 36.2675 | 7241 | 6 | 7241 | 108 | 107 | 99.0741 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3482 | 99.9034 | 98.7991 | 36.8548 | 7240 | 7 | 7240 | 88 | 87 | 98.8636 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.9950 | 99.9034 | 98.1030 | 36.7067 | 7240 | 7 | 7240 | 140 | 139 | 99.2857 | |
| jmaeng-gatk | SNP | ti | map_l125_m2_e0 | homalt | 77.8495 | 63.7436 | 99.9724 | 74.8690 | 7240 | 4118 | 7240 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2664 | 99.8896 | 98.6509 | 37.0615 | 7239 | 8 | 7239 | 99 | 98 | 98.9899 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6216 | 99.8758 | 99.3687 | 35.8426 | 7238 | 9 | 7241 | 46 | 44 | 95.6522 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2867 | 99.8758 | 98.7045 | 36.9692 | 7238 | 9 | 7238 | 95 | 94 | 98.9474 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3003 | 99.8758 | 98.7314 | 36.7417 | 7238 | 9 | 7238 | 93 | 92 | 98.9247 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2867 | 99.8758 | 98.7045 | 36.9692 | 7238 | 9 | 7238 | 95 | 94 | 98.9474 | |
| jli-custom | SNP | tv | map_l150_m2_e1 | het | 98.7581 | 98.4894 | 99.0283 | 74.4439 | 7237 | 111 | 7236 | 71 | 19 | 26.7606 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 82.1732 | 97.9957 | 70.7498 | 40.7293 | 7236 | 148 | 7624 | 3152 | 3088 | 97.9695 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e1 | het | 98.0150 | 98.4486 | 97.5853 | 79.8450 | 7234 | 114 | 7234 | 179 | 33 | 18.4358 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.5399 | 97.9550 | 97.1282 | 57.0303 | 7233 | 151 | 7204 | 213 | 194 | 91.0798 | |
| ndellapenna-hhga | INDEL | * | map_siren | * | 97.7903 | 97.6113 | 97.9700 | 96.5183 | 7233 | 177 | 7239 | 150 | 78 | 52.0000 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e1 | het | 99.0483 | 98.4349 | 99.6693 | 74.6001 | 7233 | 115 | 7233 | 24 | 9 | 37.5000 | |
| cchapple-custom | INDEL | * | map_siren | * | 97.2258 | 97.5978 | 96.8567 | 81.1585 | 7232 | 178 | 7426 | 241 | 69 | 28.6307 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.7235 | 99.7792 | 97.6898 | 36.3761 | 7231 | 16 | 7231 | 171 | 170 | 99.4152 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e0 | het | 96.2702 | 99.7104 | 93.0595 | 80.3258 | 7231 | 21 | 7160 | 534 | 11 | 2.0599 | |