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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 166 167 168 169 170 171 172 173 174 ... 1720 1721 » 8451-8500 / 86044 show all
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.4144	93.0885	99.9868	28.9050	7502	557	7550	1	1	100.0000
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.4144	93.0885	99.9868	28.9050	7502	557	7550	1	1	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.1173	93.0761	99.3641	35.8818	7501	558	7500	48	48	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.1173	93.0761	99.3641	35.8818	7501	558	7500	48	48	100.0000
ltrigg-rtg1	SNP	ti	segdup	homalt	99.7604	99.9334	99.5880	88.0751	7500	5	7494	31	31	100.0000
ghariani-varprowl	SNP	ti	segdup	homalt	99.5818	99.9334	99.2326	88.7647	7500	5	7500	58	36	62.0690
cchapple-custom	SNP	ti	map_l150_m0_e0	*	95.9984	95.3950	96.6095	81.4997	7499	362	7494	263	77	29.2776
rpoplin-dv42	SNP	ti	segdup	homalt	99.8469	99.9067	99.7871	88.5156	7498	7	7498	16	16	100.0000
egarrison-hhga	SNP	ti	segdup	homalt	99.8003	99.9067	99.6942	88.4424	7498	7	7498	23	23	100.0000
jli-custom	SNP	ti	segdup	homalt	99.9200	99.8934	99.9467	87.3710	7497	8	7497	4	4	100.0000
ndellapenna-hhga	SNP	ti	segdup	homalt	99.7406	99.8934	99.5882	88.2312	7497	8	7497	31	31	100.0000
gduggal-bwavard	SNP	ti	map_l150_m2_e1	homalt	98.6309	97.4522	99.8384	73.3079	7497	196	7414	12	9	75.0000
cchapple-custom	SNP	ti	segdup	homalt	99.8600	99.8668	99.8533	87.0523	7495	10	7487	11	11	100.0000
raldana-dualsentieon	SNP	ti	segdup	homalt	99.9134	99.8668	99.9600	87.2078	7495	10	7495	3	3	100.0000
dgrover-gatk	SNP	ti	segdup	homalt	99.9067	99.8534	99.9600	87.5169	7494	11	7494	3	3	100.0000
bgallagher-sentieon	SNP	ti	segdup	homalt	99.9000	99.8534	99.9467	87.4231	7494	11	7494	4	4	100.0000
ckim-dragen	SNP	ti	segdup	homalt	99.9000	99.8401	99.9600	86.9440	7493	12	7493	3	3	100.0000
jpowers-varprowl	SNP	ti	map_l150_m0_e0	*	96.1494	95.2932	97.0211	84.0052	7491	370	7491	230	86	37.3913
jlack-gatk	SNP	ti	segdup	homalt	99.8800	99.8135	99.9466	87.6556	7491	14	7491	4	4	100.0000
mlin-fermikit	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	83.2118	71.5131	99.4866	35.3667	7491	2984	7558	39	39	100.0000
qzeng-custom	INDEL	D6_15	HG002compoundhet	*	81.7565	82.9255	80.6200	31.3934	7489	1542	8582	2063	963	46.6796
astatham-gatk	SNP	ti	segdup	homalt	99.8666	99.7868	99.9466	87.4281	7489	16	7489	4	4	100.0000
gduggal-bwafb	SNP	ti	segdup	homalt	99.8134	99.7602	99.8666	88.7165	7487	18	7487	10	10	100.0000
jlack-gatk	SNP	ti	map_l150_m2_e0	homalt	99.0801	98.2931	99.8799	71.3088	7486	130	7486	9	7	77.7778
gduggal-snapfb	SNP	ti	segdup	homalt	99.6936	99.7335	99.6538	89.7294	7485	20	7484	26	9	34.6154
jpowers-varprowl	SNP	ti	map_l150_m2_e0	homalt	99.0406	98.2668	99.8266	75.5854	7484	132	7484	13	10	76.9231
jpowers-varprowl	SNP	*	map_l250_m2_e0	*	95.0584	94.9017	95.2157	91.6500	7483	402	7483	376	93	24.7340
ghariani-varprowl	SNP	ti	map_l150_m2_e0	homalt	99.0272	98.2405	99.8266	73.7644	7482	134	7482	13	10	76.9231
cchapple-custom	SNP	ti	map_l100_m0_e0	homalt	98.0662	96.2182	99.9866	56.4787	7480	294	7479	1	1	100.0000
gduggal-snapplat	SNP	ti	map_l125_m0_e0	het	91.6658	90.4877	92.8749	86.7400	7477	786	7482	574	330	57.4913
gduggal-bwaplat	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	86.1055	77.1255	97.4522	79.8031	7475	2217	7497	196	77	39.2857
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	95.9446	92.7410	99.3774	27.6985	7474	585	7502	47	46	97.8723
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	95.9446	92.7410	99.3774	27.6985	7474	585	7502	47	46	97.8723
gduggal-snapvard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	71.1558	89.0067	59.2690	47.6573	7473	923	18665	12827	11064	86.2556
ckim-isaac	SNP	ti	map_l150_m1_e0	het	75.2265	60.4123	99.6666	78.7514	7473	4897	7473	25	2	8.0000
ciseli-custom	SNP	ti	segdup	homalt	98.5690	99.5470	97.6100	88.0096	7471	34	7433	182	99	54.3956
gduggal-snapfb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	89.3383	88.9709	89.7087	51.9572	7470	926	12596	1445	343	23.7370
ltrigg-rtg2	SNP	*	map_l150_m0_e0	het	96.8156	94.0050	99.7994	59.7632	7464	476	7461	15	0	0.0000
ltrigg-rtg2	SNP	*	map_l250_m2_e0	*	97.1607	94.6100	99.8528	80.6416	7460	425	7460	11	4	36.3636
ckim-isaac	SNP	*	map_l125_m0_e0	het	74.0171	58.8677	99.6658	78.7645	7455	5209	7455	25	3	12.0000
gduggal-snapfb	SNP	*	map_l250_m2_e0	*	94.6894	94.5212	94.8581	89.8978	7453	432	7453	404	182	45.0495
asubramanian-gatk	SNP	ti	map_l100_m2_e0	homalt	57.8604	40.7068	100.0000	78.4309	7453	10856	7453	0	0
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	98.8905	99.9061	97.8953	39.6283	7445	7	7442	160	3	1.8750
qzeng-custom	SNP	ti	segdup	homalt	99.3042	99.2005	99.4081	87.0359	7445	60	7390	44	39	88.6364
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.8125	99.9061	99.7191	40.4113	7445	7	7455	21	2	9.5238
bgallagher-sentieon	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	98.6738	99.8792	97.4971	38.9618	7443	9	7440	191	3	1.5707
rpoplin-dv42	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.8457	99.8792	99.8121	39.2368	7443	9	7438	14	3	21.4286
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	97.1720	99.8658	94.6197	41.0468	7442	10	7439	423	4	0.9456
jli-custom	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	98.6800	99.8524	97.5347	38.6336	7441	11	7438	188	3	1.5957
gduggal-snapvard	SNP	ti	map_l150_m0_e0	*	89.0696	94.6444	84.1150	85.4263	7440	421	7371	1392	107	7.6868

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