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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
801-850 / 86044 show all
gduggal-snapvardSNPtimap_siren*
96.3076
96.1556
96.4600
63.8276
964973858955343506409
11.6657
gduggal-snapplatSNPtimap_siren*
97.1306
96.0829
98.2013
65.7243
964243931964731767855
48.3871
hfeng-pmm2SNPtvHG002complexvarhomalt
99.9732
99.9664
99.9800
23.0303
9507932950741913
68.4211
hfeng-pmm1SNPtvHG002complexvarhomalt
99.9763
99.9664
99.9863
22.9407
9507932950721311
84.6154
hfeng-pmm3SNPtvHG002complexvarhomalt
99.9769
99.9643
99.9895
22.8756
950773495069109
90.0000
raldana-dualsentieonSNPtvHG002complexvarhomalt
99.9758
99.9632
99.9884
22.8157
950763595070119
81.8182
bgallagher-sentieonSNPtvHG002complexvarhomalt
99.9663
99.9453
99.9874
22.7972
9505952950441210
83.3333
jpowers-varprowlSNPtvHG002complexvarhomalt
99.4724
99.9411
99.0081
25.6082
950555695130953743
77.9643
dgrover-gatkSNPtvHG002complexvarhomalt
99.9637
99.9411
99.9863
22.7977
9505556950401311
84.6154
ghariani-varprowlSNPtvHG002complexvarhomalt
99.3856
99.9338
98.8434
25.4168
9504863951211113736
66.1276
ckim-dragenSNPtvHG002complexvarhomalt
99.9600
99.9306
99.9895
22.9484
9504566951481010
100.0000
jli-customSNPtvHG002complexvarhomalt
99.9542
99.9254
99.9832
22.8543
9504071950291611
68.7500
rpoplin-dv42SNPtvHG002complexvarhomalt
99.9385
99.9201
99.9569
22.8530
9503576950114137
90.2439
astatham-gatkSNPtvHG002complexvarhomalt
99.9458
99.9043
99.9874
22.8056
9502091950051210
83.3333
eyeh-varpipeSNPtvHG002complexvarhomalt
99.9220
99.9001
99.9440
20.4163
9501695891805038
76.0000
jlack-gatkSNPtvHG002complexvarhomalt
99.9385
99.8959
99.9811
22.6324
9501299949941814
77.7778
ltrigg-rtg2SNPtvHG002complexvarhomalt
99.9174
99.8549
99.9800
22.4289
94973138950011919
100.0000
ltrigg-rtg1SNPtvHG002complexvarhomalt
99.9101
99.8465
99.9737
22.5425
94965146950032519
76.0000
egarrison-hhgaSNPtvHG002complexvarhomalt
99.8748
99.8086
99.9410
22.7459
94929182949385646
82.1429
ndellapenna-hhgaSNPtvHG002complexvarhomalt
99.8464
99.8065
99.8864
22.8760
949271849493510897
89.8148
gduggal-bwafbSNPtvHG002complexvarhomalt
99.8685
99.7960
99.9410
22.9952
94917194949315649
87.5000
gduggal-snapfbSNPtvHG002complexvarhomalt
99.3543
99.6457
99.0647
24.8993
9477433794793895159
17.7654
cchapple-customSNPtvHG002complexvarhomalt
99.8120
99.6331
99.9915
20.8601
947623499415987
87.5000
ciseli-customSNPtvHG002complexvarhomalt
95.4763
98.8182
92.3530
24.8215
9398711249258376662593
33.8247
qzeng-customSNPtvHG002complexvarhomalt
99.2146
98.6185
99.8179
23.3623
93797131491543167141
84.4311
jmaeng-gatkSNPtvHG002complexvarhomalt
99.2171
98.4618
99.9840
23.0284
936481463936341513
86.6667
ckim-gatkSNPtvHG002complexvarhomalt
99.2138
98.4513
99.9883
23.0317
93638147393624118
72.7273
dgrover-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2043
99.1106
99.2981
73.8671
9360984093517661572
86.5356
astatham-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.1675
99.0429
99.2924
73.5960
9354590493452666582
87.3874
mlin-fermikitSNPtvHG002complexvarhomalt
98.2029
98.2799
98.1261
24.4893
9347516369347117851729
96.8627
bgallagher-sentieonINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0261
98.9285
99.1239
73.3821
93437101293346825733
88.8485
ckim-dragenINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9722
98.8576
99.0871
73.7310
93370107993240859756
88.0093
ckim-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9696
98.6829
99.2581
73.7654
93205124493112696583
83.7644
jli-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.1076
98.6776
99.5414
71.9967
93200124993118429358
83.4499
ckim-vqsrINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9460
98.5791
99.3156
73.7970
93107134293014641576
89.8596
jmaeng-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.8577
98.4881
99.2301
73.8561
93021142892930721622
86.2691
ltrigg-rtg2INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0121
98.4584
99.5720
70.6731
92993145693299401200
49.8753
anovak-vgSNPtvHG002complexvarhomalt
98.3199
97.7479
98.8987
22.7520
929692142912421016768
75.5906
hfeng-pmm1INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9724
98.3166
99.6370
70.9510
92859159092766338265
78.4024
cchapple-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.7884
98.3155
99.2658
69.8244
928581591106946791672
84.9558
hfeng-pmm2INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9345
98.2816
99.5962
71.4015
92826162392734376307
81.6489
rpoplin-dv42INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.4841
98.2647
98.7045
79.6128
9281016399279712181144
93.9245
jlack-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.3660
98.2626
98.4696
72.6251
9280816419271714411058
73.4212
hfeng-pmm3INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9496
98.2541
99.6549
70.5915
92800164992707321262
81.6199
gduggal-snapplatSNPtvHG002complexvarhomalt
98.5607
97.4503
99.6966
24.7080
92686242592657282135
47.8723
asubramanian-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.2746
98.1228
98.4270
77.7694
926761773961101536892
58.0729
raldana-dualsentieonINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.6413
97.9883
99.3029
72.0487
92549190092457649588
90.6009
ltrigg-rtg1INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.6899
97.7438
99.6546
70.7311
92318213192612321168
52.3364
gduggal-bwavardSNPtvHG002complexvarhomalt
98.3914
96.9047
99.9244
20.9085
921672944899126835
51.4706
gduggal-snapplatINDEL**homalt
81.6385
73.6219
91.6144
63.4553
92154330189939790983079
33.8426