PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
8301-8350 / 86044 show all
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.7869
93.7966
99.9740
28.5303
7666507770121
50.0000
cchapple-customINDELD6_15*hetalt
0.0000
93.7852
0.0000
0.0000
7666508000
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.5181
93.7722
99.4296
26.3580
766450976704443
97.7273
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.6034
93.7599
99.6247
26.3649
766351076992929
100.0000
cchapple-customSNP*map_l250_m2_e1*
96.1831
95.9309
96.4367
90.2654
7662325765928366
23.3216
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.5969
93.7477
99.6247
26.3674
766251176982929
100.0000
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.0680
94.6510
99.6117
25.8826
766243376963029
96.6667
raldana-dualsentieonINDELI6_15*hetalt
94.4979
89.5802
99.9870
36.2816
7660891770011
100.0000
ltrigg-rtg1SNPtimap_l150_m2_e1homalt
99.7136
99.5710
99.8566
72.6687
76603376621111
100.0000
jli-customSNPtimap_l150_m2_e1homalt
99.7134
99.5060
99.9217
69.9097
765538765566
100.0000
bgallagher-sentieonSNPtimap_l150_m2_e1homalt
99.6940
99.5060
99.8826
70.5038
765538765597
77.7778
ltrigg-rtg2SNPtimap_l150_m2_e1homalt
99.7069
99.4930
99.9217
70.4375
765439765666
100.0000
jmaeng-gatkINDELD6_15*hetalt
96.4840
93.6261
99.5219
32.9957
765352177023737
100.0000
raldana-dualsentieonSNPtimap_l150_m2_e1homalt
99.6939
99.4800
99.9086
69.7472
765340765376
85.7143
ndellapenna-hhgaSNPtimap_l150_m2_e1homalt
99.6938
99.4670
99.9217
72.2586
765241765266
100.0000
hfeng-pmm3INDELD6_15HG002compoundhethetalt
96.8362
93.8781
99.9869
24.0528
7652499765610
0.0000
ltrigg-rtg1SNP*map_l250_m2_e1*
97.7139
95.7932
99.7133
83.6180
765133676512211
50.0000
ckim-dragenINDELD6_15*hetalt
96.4645
93.5894
99.5217
32.8589
765052476993737
100.0000
bgallagher-sentieonINDELD6_15HG002compoundhethetalt
96.6337
93.8535
99.5837
23.7576
765050176543232
100.0000
cchapple-customINDELD6_15HG002compoundhethetalt
0.0000
93.8412
0.0000
0.0000
7649502000
raldana-dualsentieonINDELI6_15HG002compoundhethetalt
94.4942
89.5631
100.0000
28.5953
7646891768600
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.1244
94.8753
99.4828
30.2426
764641376944038
95.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.1244
94.8753
99.4828
30.2426
764641376944038
95.0000
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
90.2681
82.2624
100.0000
94.4664
764316481400
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
90.2681
82.2624
100.0000
94.4664
764316481400
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.9440
94.4163
99.6108
25.7275
764345276783029
96.6667
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.4599
93.4908
99.6237
26.2417
764153276782929
100.0000
asubramanian-gatkINDELD6_15*hetalt
96.0019
93.4549
98.6916
34.2221
7639535769410298
96.0784
ndellapenna-hhgaSNP*map_l250_m2_e0*
98.1811
96.8675
99.5309
87.5400
763824776383619
52.7778
jmaeng-gatkINDELD6_15HG002compoundhethetalt
96.5549
93.6940
99.5959
24.0546
763751476413131
100.0000
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.0717
94.7636
99.4951
30.0679
763742276853938
97.4359
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.0717
94.7636
99.4951
30.0679
763742276853938
97.4359
dgrover-gatkSNPtimap_l150_m2_e1homalt
99.5631
99.2331
99.8953
71.0135
763459763486
75.0000
ckim-dragenINDELD6_15HG002compoundhethetalt
96.5353
93.6572
99.5958
23.6915
763451776383131
100.0000
anovak-vgSNPtvmap_l100_m1_e0homalt
91.2106
84.4078
99.2060
60.5879
7633141076226145
73.7705
jpowers-varprowlSNPtimap_l100_m0_e0homalt
99.0013
98.1863
99.8300
65.3054
763314176331310
76.9231
ghariani-varprowlSNPtimap_l100_m0_e0homalt
98.9754
98.1605
99.8038
62.7769
763114376311510
66.6667
gduggal-bwavardSNPtimap_l150_m0_e0*
92.8160
97.0360
88.9477
85.9871
7628233756594050
5.3192
jlack-gatkSNPtimap_l100_m0_e0homalt
98.9685
98.1219
99.8299
59.9927
762814676281311
84.6154
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
94.2063
0.0000
0.0000
7626469000
ckim-dragenSNPtimap_l150_m2_e1homalt
99.4457
99.1031
99.7907
67.9320
76246976291615
93.7500
ckim-isaacSNPtiHG002compoundhethet
88.4015
80.2104
98.4558
36.9008
76241881790612419
15.3226
rpoplin-dv42SNPtimap_l150_m2_e1homalt
99.3872
99.0901
99.6862
73.4415
76237076232423
95.8333
asubramanian-gatkINDELD6_15HG002compoundhethetalt
96.1166
93.5100
98.8728
25.0680
762252976318783
95.4023
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.4989
93.2461
99.9869
27.4123
7621552765710
0.0000
gduggal-snapvardSNP*map_l250_m2_e1*
86.3822
95.4176
78.9099
91.6016
762136675432016102
5.0595
gduggal-snapfbINDELI6_15*het
80.8118
75.9494
86.3394
31.4688
762024131215419231866
97.0359
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.3159
93.2216
99.6227
27.1443
761955476582929
100.0000
raldana-dualsentieonINDELD6_15*hetalt
96.4666
93.1857
99.9870
32.1144
7617557766611
100.0000
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.2896
93.1726
99.6223
27.3304
761555876502928
96.5517