PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8301-8350 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.7869 | 93.7966 | 99.9740 | 28.5303 | 7666 | 507 | 7701 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | D6_15 | * | hetalt | 0.0000 | 93.7852 | 0.0000 | 0.0000 | 7666 | 508 | 0 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.5181 | 93.7722 | 99.4296 | 26.3580 | 7664 | 509 | 7670 | 44 | 43 | 97.7273 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.6034 | 93.7599 | 99.6247 | 26.3649 | 7663 | 510 | 7699 | 29 | 29 | 100.0000 | |
| cchapple-custom | SNP | * | map_l250_m2_e1 | * | 96.1831 | 95.9309 | 96.4367 | 90.2654 | 7662 | 325 | 7659 | 283 | 66 | 23.3216 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.5969 | 93.7477 | 99.6247 | 26.3674 | 7662 | 511 | 7698 | 29 | 29 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.0680 | 94.6510 | 99.6117 | 25.8826 | 7662 | 433 | 7696 | 30 | 29 | 96.6667 | |
| raldana-dualsentieon | INDEL | I6_15 | * | hetalt | 94.4979 | 89.5802 | 99.9870 | 36.2816 | 7660 | 891 | 7700 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e1 | homalt | 99.7136 | 99.5710 | 99.8566 | 72.6687 | 7660 | 33 | 7662 | 11 | 11 | 100.0000 | |
| jli-custom | SNP | ti | map_l150_m2_e1 | homalt | 99.7134 | 99.5060 | 99.9217 | 69.9097 | 7655 | 38 | 7655 | 6 | 6 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | map_l150_m2_e1 | homalt | 99.6940 | 99.5060 | 99.8826 | 70.5038 | 7655 | 38 | 7655 | 9 | 7 | 77.7778 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m2_e1 | homalt | 99.7069 | 99.4930 | 99.9217 | 70.4375 | 7654 | 39 | 7656 | 6 | 6 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | * | hetalt | 96.4840 | 93.6261 | 99.5219 | 32.9957 | 7653 | 521 | 7702 | 37 | 37 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | map_l150_m2_e1 | homalt | 99.6939 | 99.4800 | 99.9086 | 69.7472 | 7653 | 40 | 7653 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | SNP | ti | map_l150_m2_e1 | homalt | 99.6938 | 99.4670 | 99.9217 | 72.2586 | 7652 | 41 | 7652 | 6 | 6 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | HG002compoundhet | hetalt | 96.8362 | 93.8781 | 99.9869 | 24.0528 | 7652 | 499 | 7656 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | map_l250_m2_e1 | * | 97.7139 | 95.7932 | 99.7133 | 83.6180 | 7651 | 336 | 7651 | 22 | 11 | 50.0000 | |
| ckim-dragen | INDEL | D6_15 | * | hetalt | 96.4645 | 93.5894 | 99.5217 | 32.8589 | 7650 | 524 | 7699 | 37 | 37 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | HG002compoundhet | hetalt | 96.6337 | 93.8535 | 99.5837 | 23.7576 | 7650 | 501 | 7654 | 32 | 32 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | HG002compoundhet | hetalt | 0.0000 | 93.8412 | 0.0000 | 0.0000 | 7649 | 502 | 0 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | HG002compoundhet | hetalt | 94.4942 | 89.5631 | 100.0000 | 28.5953 | 7646 | 891 | 7686 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.1244 | 94.8753 | 99.4828 | 30.2426 | 7646 | 413 | 7694 | 40 | 38 | 95.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.1244 | 94.8753 | 99.4828 | 30.2426 | 7646 | 413 | 7694 | 40 | 38 | 95.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 90.2681 | 82.2624 | 100.0000 | 94.4664 | 7643 | 1648 | 14 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 90.2681 | 82.2624 | 100.0000 | 94.4664 | 7643 | 1648 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.9440 | 94.4163 | 99.6108 | 25.7275 | 7643 | 452 | 7678 | 30 | 29 | 96.6667 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.4599 | 93.4908 | 99.6237 | 26.2417 | 7641 | 532 | 7678 | 29 | 29 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | * | hetalt | 96.0019 | 93.4549 | 98.6916 | 34.2221 | 7639 | 535 | 7694 | 102 | 98 | 96.0784 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e0 | * | 98.1811 | 96.8675 | 99.5309 | 87.5400 | 7638 | 247 | 7638 | 36 | 19 | 52.7778 | |
| jmaeng-gatk | INDEL | D6_15 | HG002compoundhet | hetalt | 96.5549 | 93.6940 | 99.5959 | 24.0546 | 7637 | 514 | 7641 | 31 | 31 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.0717 | 94.7636 | 99.4951 | 30.0679 | 7637 | 422 | 7685 | 39 | 38 | 97.4359 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.0717 | 94.7636 | 99.4951 | 30.0679 | 7637 | 422 | 7685 | 39 | 38 | 97.4359 | |
| dgrover-gatk | SNP | ti | map_l150_m2_e1 | homalt | 99.5631 | 99.2331 | 99.8953 | 71.0135 | 7634 | 59 | 7634 | 8 | 6 | 75.0000 | |
| ckim-dragen | INDEL | D6_15 | HG002compoundhet | hetalt | 96.5353 | 93.6572 | 99.5958 | 23.6915 | 7634 | 517 | 7638 | 31 | 31 | 100.0000 | |
| anovak-vg | SNP | tv | map_l100_m1_e0 | homalt | 91.2106 | 84.4078 | 99.2060 | 60.5879 | 7633 | 1410 | 7622 | 61 | 45 | 73.7705 | |
| jpowers-varprowl | SNP | ti | map_l100_m0_e0 | homalt | 99.0013 | 98.1863 | 99.8300 | 65.3054 | 7633 | 141 | 7633 | 13 | 10 | 76.9231 | |
| ghariani-varprowl | SNP | ti | map_l100_m0_e0 | homalt | 98.9754 | 98.1605 | 99.8038 | 62.7769 | 7631 | 143 | 7631 | 15 | 10 | 66.6667 | |
| gduggal-bwavard | SNP | ti | map_l150_m0_e0 | * | 92.8160 | 97.0360 | 88.9477 | 85.9871 | 7628 | 233 | 7565 | 940 | 50 | 5.3192 | |
| jlack-gatk | SNP | ti | map_l100_m0_e0 | homalt | 98.9685 | 98.1219 | 99.8299 | 59.9927 | 7628 | 146 | 7628 | 13 | 11 | 84.6154 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 94.2063 | 0.0000 | 0.0000 | 7626 | 469 | 0 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l150_m2_e1 | homalt | 99.4457 | 99.1031 | 99.7907 | 67.9320 | 7624 | 69 | 7629 | 16 | 15 | 93.7500 | |
| ckim-isaac | SNP | ti | HG002compoundhet | het | 88.4015 | 80.2104 | 98.4558 | 36.9008 | 7624 | 1881 | 7906 | 124 | 19 | 15.3226 | |
| rpoplin-dv42 | SNP | ti | map_l150_m2_e1 | homalt | 99.3872 | 99.0901 | 99.6862 | 73.4415 | 7623 | 70 | 7623 | 24 | 23 | 95.8333 | |
| asubramanian-gatk | INDEL | D6_15 | HG002compoundhet | hetalt | 96.1166 | 93.5100 | 98.8728 | 25.0680 | 7622 | 529 | 7631 | 87 | 83 | 95.4023 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.4989 | 93.2461 | 99.9869 | 27.4123 | 7621 | 552 | 7657 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e1 | * | 86.3822 | 95.4176 | 78.9099 | 91.6016 | 7621 | 366 | 7543 | 2016 | 102 | 5.0595 | |
| gduggal-snapfb | INDEL | I6_15 | * | het | 80.8118 | 75.9494 | 86.3394 | 31.4688 | 7620 | 2413 | 12154 | 1923 | 1866 | 97.0359 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.3159 | 93.2216 | 99.6227 | 27.1443 | 7619 | 554 | 7658 | 29 | 29 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | * | hetalt | 96.4666 | 93.1857 | 99.9870 | 32.1144 | 7617 | 557 | 7666 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.2896 | 93.1726 | 99.6223 | 27.3304 | 7615 | 558 | 7650 | 29 | 28 | 96.5517 | |