PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
8201-8250 / 86044 show all
gduggal-bwafbSNP*map_l250_m2_e1*
97.8266
97.4959
98.1596
89.9363
7787200778714639
26.7123
gduggal-bwavardSNP*map_l250_m2_e1*
90.6461
97.4959
84.6957
92.1274
77872007709139345
3.2304
gduggal-bwaplatINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
84.2729
74.8150
96.4680
58.6163
77862621778428597
34.0351
raldana-dualsentieonSNP*map_l150_m0_e0het
97.9798
98.0605
97.8994
80.7841
778615477831672
1.1976
hfeng-pmm1SNP*map_l250_m2_e0*
98.8758
98.7191
99.0331
88.4730
778410177847617
22.3684
ckim-dragenSNP*map_l150_m0_e0het
96.9776
97.9975
95.9788
84.1657
7781159778132626
7.9755
gduggal-snapplatSNPtvHG002compoundhet*
81.2573
87.2016
76.0717
63.0432
7781114278082456275
11.1971
ghariani-varprowlSNP*map_l250_m2_e1*
95.6014
97.4208
93.8488
91.4722
7781206778151089
17.4510
hfeng-pmm1SNPtimap_l150_m0_e0*
99.1145
98.9696
99.2598
79.4196
77808177785812
20.6897
jli-customSNP*map_l250_m2_e1*
98.2877
97.3832
99.2092
86.6868
777820977786230
48.3871
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
84.1619
82.2267
86.1905
45.3886
77771681778312471228
98.4763
asubramanian-gatkINDELI6_15HG002compoundhethetalt
94.9935
91.0859
99.2515
30.1736
777676178235955
93.2203
mlin-fermikitSNPtvmap_l125_m1_e0*
61.8003
48.5452
85.0126
58.2565
77758241777113701205
87.9562
egarrison-hhgaSNP*map_l150_m0_e0het
98.7297
97.8841
99.5900
80.6088
777216877723211
34.3750
gduggal-bwafbSNP*map_l150_m0_e0het
97.7971
97.8463
97.7479
82.8433
7769171776917954
30.1676
dgrover-gatkSNPtimap_l150_m0_e0*
98.8419
98.8169
98.8670
81.9794
77689377668919
21.3483
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
87.7796
92.4607
83.5496
48.0211
7763633772515211474
96.9099
eyeh-varpipeSNPtimap_l100_m0_e0homalt
99.8506
99.8328
99.8684
64.9624
7761137590105
50.0000
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
53.3229
48.2739
59.5513
59.8591
776183161072472845656
77.6496
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
53.3229
48.2739
59.5513
59.8591
776183161072472845656
77.6496
dgrover-gatkINDELD6_15*hetalt
97.1534
94.9352
99.4777
33.7944
776041478094139
95.1220
hfeng-pmm2SNPtimap_l100_m0_e0homalt
99.7813
99.7685
99.7941
63.0398
7756187756167
43.7500
dgrover-gatkSNP*map_l250_m2_e0*
98.4387
98.3513
98.5262
90.2982
7755130775511630
25.8621
gduggal-bwavardSNP*map_l150_m0_e0het
89.4308
97.6574
82.4825
88.0388
77541867675163060
3.6810
hfeng-pmm3SNPtimap_l100_m0_e0homalt
99.7684
99.7299
99.8069
62.9000
7753217753156
40.0000
hfeng-pmm1SNPtimap_l100_m0_e0homalt
99.7619
99.7170
99.8069
63.0178
7752227752156
40.0000
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.6332
95.7628
99.5781
24.7836
775234377883332
96.9697
astatham-gatkINDELD6_15*hetalt
97.1014
94.8251
99.4898
33.5762
775142378004039
97.5000
egarrison-hhgaSNPtimap_l100_m0_e0homalt
99.8003
99.6656
99.9355
61.1047
774826774855
100.0000
ciseli-customSNPtvmap_l150_m1_e0*
76.2235
70.9861
82.2954
80.7468
7746316677441666387
23.2293
ltrigg-rtg1INDELI6_15*hetalt
94.9898
90.5742
99.8580
43.9696
774580677381110
90.9091
rpoplin-dv42INDELI6_15*hetalt
94.8036
90.5625
99.4614
37.3252
774480777564240
95.2381
raldana-dualsentieonSNPtimap_l150_m0_e0*
98.4611
98.4989
98.4234
78.1788
774311877411245
4.0323
egarrison-hhgaSNPtimap_l150_m0_e0*
99.1041
98.4989
99.7167
79.0350
774311877432210
45.4545
dgrover-gatkINDELD6_15HG002compoundhethetalt
97.2251
94.9945
99.5630
24.6392
774340877473433
97.0588
ltrigg-rtg1SNPtimap_l100_m0_e0homalt
99.7102
99.5884
99.8324
61.6545
77423277421313
100.0000
raldana-dualsentieonSNP*map_l250_m2_e0*
98.1797
98.1611
98.1984
88.2926
774014577401426
4.2254
jli-customSNP*map_l150_m0_e0het
98.2666
97.4559
99.0908
76.5432
773820277387122
30.9859
ckim-dragenSNPtimap_l150_m0_e0*
97.7765
98.4353
97.1264
80.6352
7738123774022928
12.2271
ltrigg-rtg2SNPtimap_l100_m0_e0homalt
99.7358
99.5369
99.9354
58.2970
773836773855
100.0000
ndellapenna-hhgaSNP*map_l250_m2_e1*
98.1855
96.8824
99.5241
87.6224
773824977383719
51.3514
raldana-dualsentieonSNPtimap_l100_m0_e0homalt
99.7165
99.5241
99.9096
57.9975
773737773776
85.7143
astatham-gatkINDELD6_15HG002compoundhethetalt
97.1670
94.8841
99.5625
24.4483
773441777383433
97.0588
ltrigg-rtg1INDELI6_15HG002compoundhethetalt
95.0169
90.5822
99.9083
29.3644
7733804762876
85.7143
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.0455
94.6164
99.6025
28.0867
773344077683129
93.5484
jmaeng-gatkSNPtvmap_l150_m2_e0*
79.9418
68.0934
96.7823
89.5425
7732362377302577
2.7237
bgallagher-sentieonSNPtimap_l100_m0_e0homalt
99.6648
99.4469
99.8837
59.2653
773143773197
77.7778
ndellapenna-hhgaSNPtimap_l100_m0_e0homalt
99.6905
99.4469
99.9354
59.4017
773143773155
100.0000
jli-customSNPtimap_l100_m0_e0homalt
99.6776
99.4340
99.9224
57.9039
773044773066
100.0000
rpoplin-dv42INDELI6_15HG002compoundhethetalt
95.0099
90.5470
99.9355
28.7042
7730807774255
100.0000