PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
8151-8200 / 86044 show all
jmaeng-gatkINDELI6_15*hetalt
95.7466
91.8723
99.9620
36.0612
7856695789632
66.6667
jmaeng-gatkSNPtvmap_l150_m2_e1*
80.0731
68.3012
96.7480
89.5225
7856364678542648
3.0303
dgrover-gatkSNP*map_l250_m2_e1*
98.4461
98.3598
98.5325
90.3561
7856131785611730
25.6410
hfeng-pmm3SNP*map_l150_m0_e0het
98.9660
98.8665
99.0658
81.0107
7850907847742
2.7027
hfeng-pmm2SNP*map_l150_m0_e0het
98.4569
98.8665
98.0507
83.2717
785090784715611
7.0513
jmaeng-gatkSNPtvmap_l100_m0_e0*
81.7650
70.7957
96.7567
85.8314
78473237784626311
4.1825
eyeh-varpipeSNP*map_l250_m2_e0*
98.9405
99.4800
98.4068
90.5464
784441765912412
9.6774
raldana-dualsentieonINDELI6_15HG002compoundhet*
92.3351
89.3573
95.5182
36.0215
78429347843368366
99.4565
jmaeng-gatkINDELI6_15HG002compoundhethetalt
95.7568
91.8590
100.0000
28.4755
7842695788200
dgrover-gatkSNP*map_l150_m0_e0het
98.4616
98.7657
98.1593
84.6929
784298783914723
15.6463
ndellapenna-hhgaINDELI6_15*hetalt
95.2209
91.6969
99.0267
38.6839
784171078347770
90.9091
raldana-dualsentieonSNP*map_l250_m2_e1*
98.1843
98.1720
98.1966
88.3789
784114678411446
4.1667
ckim-gatkSNPtvmap_l150_m2_e1*
80.0038
68.1273
96.8955
89.4103
7836366678342519
3.5857
ckim-gatkSNPtvmap_l100_m0_e0*
81.7454
70.6424
96.9896
85.6470
78303254782924311
4.5268
ltrigg-rtg2INDELD6_15*hetalt
97.5461
95.7915
99.3661
40.2288
783034478385050
100.0000
egarrison-hhgaINDELI6_15*hetalt
95.1738
91.5448
99.1023
37.9004
782872378387163
88.7324
ndellapenna-hhgaINDELI6_15HG002compoundhethetalt
95.3870
91.6833
99.4026
27.8852
782771078204742
89.3617
rpoplin-dv42SNP*map_l250_m2_e1*
98.3291
97.9967
98.6638
88.0879
7827160782710670
66.0377
hfeng-pmm1SNP*map_l150_m0_e0het
98.8251
98.5390
99.1129
80.9036
782411678217011
15.7143
jli-customINDELD6_15*hetalt
97.5456
95.7181
99.4442
33.1475
782435078724442
95.4545
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.6055
95.7176
99.5693
26.7854
782335078603432
94.1176
gduggal-bwaplatSNPtvHG002compoundhet*
87.7776
87.6611
87.8944
56.9502
7822110178561082151
13.9556
ckim-dragenINDELI6_15*hetalt
95.5238
91.4630
99.9619
38.0544
7821730786133
100.0000
eyeh-varpipeSNPtimap_l150_m0_e0*
98.7920
99.4784
98.1149
82.5537
78204177031487
4.7297
jlack-gatkSNP*map_l250_m2_e1*
93.5343
97.8966
89.5442
92.9358
7819168781991369
7.5575
egarrison-hhgaSNP*map_l250_m2_e1*
98.7184
97.8841
99.5670
88.3214
781816978183416
47.0588
egarrison-hhgaINDELI6_15HG002compoundhethetalt
95.3278
91.5310
99.4533
27.1869
781472378234337
86.0465
jlack-gatkINDELI6_15HG002compoundhet*
90.8429
89.0155
92.7469
37.7522
78129647813611606
99.1817
ltrigg-rtg2INDELD6_15HG002compoundhethetalt
97.6303
95.8410
99.4878
26.1770
781233977694040
100.0000
jlack-gatkSNP*map_l150_m0_e0het
91.7997
98.3753
86.0480
89.1426
78111297808126694
7.4250
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.9874
96.4793
99.5434
33.1326
781028578493636
100.0000
jli-customINDELD6_15HG002compoundhethetalt
97.6428
95.7919
99.5667
24.6880
780834378123433
97.0588
ckim-dragenINDELI6_15HG002compoundhethetalt
95.5341
91.4607
99.9873
29.2729
7808729784911
100.0000
mlin-fermikitSNP*map_l150_m2_e0het
55.5672
38.7672
98.0639
69.9736
78051232878001545
3.2468
ghariani-varprowlSNP*map_l150_m0_e0het
95.5372
98.2746
92.9482
86.2530
78031377803592131
22.1284
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
46.7074
0.0000
0.0000
78028902000
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
46.7074
0.0000
0.0000
78028902000
rpoplin-dv42SNP*map_l150_m0_e0het
98.3050
98.2620
98.3480
79.4809
7802138779913182
62.5954
ckim-dragenSNP*map_l250_m2_e1*
97.2818
97.6712
96.8956
89.8498
7801186780325032
12.8000
hfeng-pmm2SNPtimap_l150_m0_e0*
98.9345
99.2367
98.6341
81.2825
780160779910813
12.0370
hfeng-pmm3SNP*map_l250_m2_e0*
99.0163
98.9347
99.0981
88.6629
7801847801719
12.6761
bgallagher-sentieonINDELI6_15*hetalt
95.3960
91.2291
99.9618
38.0362
7801750784133
100.0000
hfeng-pmm3SNPtimap_l150_m0_e0*
99.2301
99.2113
99.2490
79.5379
7799627797596
10.1695
gduggal-bwaplatSNPtimap_l150_m2_e0het
75.1762
60.5388
99.1490
91.7226
7798508378066722
32.8358
hfeng-pmm2SNP*map_l250_m2_e0*
98.6338
98.8840
98.3849
89.8595
779788779712816
12.5000
anovak-vgSNPtvmap_l100_m2_e0homalt
91.3367
84.6212
99.2099
63.3369
7797141777856246
74.1935
bgallagher-sentieonSNP*map_l250_m2_e0*
98.4835
98.8332
98.1363
89.4731
779392779314832
21.6216
bgallagher-sentieonSNPtimap_l150_m0_e0*
98.8263
99.0968
98.5573
80.5178
779071778811420
17.5439
asubramanian-gatkINDELI6_15*hetalt
94.9273
91.1005
99.0896
39.2643
779076178377268
94.4444
bgallagher-sentieonINDELI6_15HG002compoundhethetalt
95.3997
91.2147
99.9872
29.5092
7787750782711
100.0000