PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
7951-8000 / 86044 show all
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.9414
98.3852
99.5039
60.3844
822513582244136
87.8049
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.9414
98.3852
99.5039
60.3844
822513582244136
87.8049
jlack-gatkINDELD6_15HG002compoundhet*
92.1390
91.0641
93.2396
35.4470
82248078220596552
92.6174
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.5354
97.7762
99.3066
59.4807
822218783065819
32.7586
jpowers-varprowlINDELI6_15*het
67.8850
81.9496
57.9408
49.0356
82221811826760015983
99.7000
eyeh-varpipeSNPtimap_l125_m0_e0het
98.5647
99.5038
97.6432
79.9389
82224180791958
4.1026
gduggal-snapplatSNPtvmap_l100_m1_e0homalt
95.2001
90.9101
99.9149
63.7649
8221822822272
28.5714
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.0520
90.0033
98.4822
69.9861
8220913830512813
10.1562
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.0520
90.0033
98.4822
69.9861
8220913830512813
10.1562
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.1287
97.8680
98.3908
64.4221
82171798193134104
77.6119
ciseli-customSNPtvmap_l100_m0_e0*
78.9086
74.1158
84.3641
75.9006
8215286982121522391
25.6899
dgrover-gatkINDELI6_15HG002compoundhet*
94.9104
93.5962
96.2620
37.4707
82145628215319317
99.3730
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8625
98.1712
99.5636
45.3709
821315382133634
94.4444
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.2994
98.2297
92.5388
63.5670
82121488223663640
96.5309
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.2994
98.2297
92.5388
63.5670
82121488223663640
96.5309
qzeng-customINDELI1_5HG002compoundhethetalt
84.6325
73.4723
99.7902
54.7416
82122965332975
71.4286
cchapple-customINDELI6_15HG002compoundhet*
95.3148
93.5278
97.1715
34.8185
82085689894288283
98.2639
gduggal-bwaplatSNP*map_l125_m1_e0homalt
65.3285
48.5182
99.9634
78.9108
82028703819533
100.0000
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.4453
97.6298
99.2746
55.5967
819719982116020
33.3333
bgallagher-sentieonSNPtimap_l125_m0_e0het
98.6693
99.1771
98.1668
78.4213
819568819315325
16.3399
ckim-isaacSNPtvsegdup*
97.9382
96.0384
99.9147
88.7225
8194338819674
57.1429
hfeng-pmm2SNPtimap_l125_m0_e0het
98.8238
99.1529
98.4969
78.6095
819370819112511
8.8000
hfeng-pmm3SNPtimap_l125_m0_e0het
99.1947
99.1407
99.2487
75.9543
8192718190626
9.6774
qzeng-customSNP*map_l100_m0_e0homalt
82.4060
70.4991
99.1522
62.7863
8192342880706968
98.5507
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
84.3874
97.5345
74.3636
48.4035
8189207867629912903
97.0578
astatham-gatkINDELI6_15HG002compoundhet*
94.7145
93.3113
96.1606
37.2227
81895878190327325
99.3884
dgrover-gatkSNPtimap_l125_m0_e0het
98.8408
99.0802
98.6026
80.1354
818776818511625
21.5517
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.8942
97.8828
99.9267
51.0090
8183177817566
100.0000
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.8942
97.8828
99.9267
51.0090
8183177817566
100.0000
mlin-fermikitSNPtvmap_l125_m2_e0*
62.7919
49.6210
85.4813
62.5997
81828307817813891218
87.6890
ckim-vqsrSNPtimap_l100_m2_e0homalt
61.7649
44.6884
99.9633
77.1942
818210127818233
100.0000
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
81.2553
73.6695
90.5826
44.2627
818129242068215132
61.3953
hfeng-pmm2INDELI6_15HG002compoundhet*
95.0368
93.1632
96.9873
36.8937
81766008177254252
99.2126
asubramanian-gatkSNP*map_l150_m2_e1*
40.4494
25.3710
99.7071
94.4964
8172240388169246
25.0000
ciseli-customSNPtvmap_l100_m2_e1homalt
89.1763
87.8306
90.5639
64.9644
817011328158850639
75.1765
hfeng-pmm1SNPtimap_l125_m0_e0het
99.0169
98.7414
99.2940
75.6362
815910481575815
25.8621
jlack-gatkSNPtimap_l125_m0_e0het
93.6780
98.7414
89.1086
85.4382
8159104815799787
8.7262
rpoplin-dv42SNPtimap_l125_m0_e0het
98.8184
98.6930
98.9442
74.5223
815510881538754
62.0690
jmaeng-gatkSNPtvmap_l125_m1_e0het
87.4372
80.5254
95.6471
87.5400
81541972815237112
3.2345
qzeng-customSNPtimap_l125_m2_e0homalt
83.3237
71.7644
99.3217
66.9963
8151320780545554
98.1818
qzeng-customSNPtimap_l125_m0_e0*
76.6106
63.8536
95.7374
88.8132
814946138108361304
84.2105
hfeng-pmm3INDELI6_15HG002compoundhet*
95.0754
92.8327
97.4292
36.3885
81476298148215212
98.6047
ckim-dragenSNPtimap_l125_m0_e0het
97.4340
98.5598
96.3335
79.4732
8144119814531027
8.7097
hfeng-pmm1INDELI6_15HG002compoundhet*
94.9235
92.7871
97.1606
36.4711
81436338144238235
98.7395
raldana-dualsentieonSNPtimap_l125_m0_e0het
98.3262
98.4751
98.1776
75.7875
813712681351511
0.6623
ckim-gatkSNPtvmap_l125_m1_e0het
87.4351
80.3377
95.9080
87.2955
81351991813334714
4.0346
ghariani-varprowlSNPtimap_l125_m0_e0het
96.8041
98.4267
95.2342
81.7798
8133130813340798
24.0786
ltrigg-rtg2INDELI6_15*hetalt
97.3347
95.0298
99.7542
44.1554
812642581162019
95.0000
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
69.4365
97.1073
54.0383
40.3757
81242421174999939948
99.5497
gduggal-bwafbSNPtimap_l125_m0_e0het
98.2879
98.3057
98.2700
78.1213
8123140812314344
30.7692